Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00008 and RBAM_000070
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:47
# Commandline: needle
# -asequence dna-align/BSNT_00008___gyrA.1.9828.seq
# -bsequence dna-align/RBAM_000070___gyrA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00008___gyrA-RBAM_000070___gyrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00008___gyrA-RBAM_000070___gyrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00008___gyrA
# 2: RBAM_000070___gyrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2470
# Identity: 1918/2470 (77.7%)
# Similarity: 1918/2470 (77.7%)
# Gaps: 92/2470 ( 3.7%)
# Score: 7695.5
#
#
#=======================================
BSNT_00008___ 1 ATGAGTGAACAAAACACACCACAAGTTCGTGAAATAAATATCAGTCAGGA 50
RBAM_000070__ 0 -------------------------------------------------- 0
BSNT_00008___ 51 AATGCGTACGTCCTTCTTGGATTATGCAATGAGCGTTATCGTGTCCCGTG 100
||||||||||||||.|||||.|
RBAM_000070__ 1 ----------------------------ATGAGCGTTATCGTATCCCGGG 22
BSNT_00008___ 101 CTCTTCCGGATGTTCGAGACGGTTTAAAACCGGTTCATAGACGGATTTTG 150
|.|||||||||||.||.||||||.|.||.||||||||.||.|||||||||
RBAM_000070__ 23 CGCTTCCGGATGTGCGTGACGGTCTGAAGCCGGTTCACAGGCGGATTTTG 72
BSNT_00008___ 151 TATGCAATGAATGATTTAGGCATGACAAGTGACAAGCCTTATAAAAAATC 200
||.|||||||||||||||||||||||.||||||||.||.|||||||||||
RBAM_000070__ 73 TACGCAATGAATGATTTAGGCATGACCAGTGACAAACCATATAAAAAATC 122
BSNT_00008___ 201 CGCGCGTATCGTTGGAGAAGTTATCGGGAAATACCACCCGCACGGTGATT 250
.||.||||||||.||.|||||||||||.||.|||||||||||||||||.|
RBAM_000070__ 123 TGCCCGTATCGTCGGTGAAGTTATCGGTAAGTACCACCCGCACGGTGACT 172
BSNT_00008___ 251 CAGCGGTATATGAATCCATGGTTAGAATGGCTCAGGATTTCAACTACCGT 300
|||||||.||.|||||.|||||.||||||||.||||||||.||||||||.
RBAM_000070__ 173 CAGCGGTTTACGAATCAATGGTCAGAATGGCGCAGGATTTTAACTACCGC 222
BSNT_00008___ 301 TATATGCTCGTTGACGGTCATGGAAACTTCGGTTCTGTTGACGGAGACTC 350
||.|||||.||||||||.||.||.|||||||||||.||||||||.|||||
RBAM_000070__ 223 TACATGCTTGTTGACGGACACGGCAACTTCGGTTCGGTTGACGGCGACTC 272
BSNT_00008___ 351 AGCGGCGGCCATGCGTTATACAGAAGCAAGAATGTCTAAAATCTCAATGG 400
||||||.||.||||||||.||||||||.||||||||.||||||.||||||
RBAM_000070__ 273 AGCGGCCGCGATGCGTTACACAGAAGCGAGAATGTCAAAAATCGCAATGG 322
BSNT_00008___ 401 AGATTCTTCGCGACATCACAAAAGACACAATCGATTACCAGGATAACTAT 450
|.||.||.||.||.||.||.|||||.||.||.|||||.||.|||||||||
RBAM_000070__ 323 AAATCCTCCGGGATATTACGAAAGATACGATTGATTATCAAGATAACTAT 372
BSNT_00008___ 451 GACGGGTCAGAAAGAGAACCTGTCGTTATGCCTTCAAGGTTCCCGAATCT 500
|||||..|||||||||||||||||||.||||||||.||.||.||||||||
RBAM_000070__ 373 GACGGCGCAGAAAGAGAACCTGTCGTCATGCCTTCGAGATTTCCGAATCT 422
BSNT_00008___ 501 GCTCGTGAACGGTGCTGCCGGCATTGCGGTAGGTATGGCAACAAACATTC 550
||||||.|||||.||||||||.||||||||.||.|||||.|||||.||||
RBAM_000070__ 423 GCTCGTAAACGGAGCTGCCGGTATTGCGGTCGGAATGGCGACAAATATTC 472
BSNT_00008___ 551 CTCCTCACCAGCTGGGAGAAATCATTGACGGTGTACTTGCTGTCAGTGAG 600
||||.||.|||||.||.|||.|||||||.||.||.|||||.||.||.|||
RBAM_000070__ 473 CTCCGCATCAGCTTGGGGAAGTCATTGAAGGCGTGCTTGCCGTAAGCGAG 522
BSNT_00008___ 601 AATCCGGACATTACCATTCCA-GAGCTTATGGAAGTCATTCCAGGGCCTG 649
|||||.||.|||| ||..||| |||||.||||||..|||.||.||.||.|
RBAM_000070__ 523 AATCCTGAGATTA-CAAACCAGGAGCTGATGGAATACATCCCGGGCCCGG 571
BSNT_00008___ 650 ATTTCCCGACCGCGGGTCAAATCTTGGGACGCAGCGGTATCCGGAAAGCA 699
||||.|||||.||.|||||.||.|||||.||.|||||.|||||.||.|||
RBAM_000070__ 572 ATTTTCCGACTGCAGGTCAGATTTTGGGCCGGAGCGGCATCCGCAAGGCA 621
BSNT_00008___ 700 TACGAATCAGGCCGAGGCTCTATCACGATCCGGGCAAAAGCTGAGATCGA 749
||.|||||.||.||.||.||.|||||.||||||||.||.|||||.|||||
RBAM_000070__ 622 TATGAATCCGGACGGGGATCAATCACAATCCGGGCTAAGGCTGAAATCGA 671
BSNT_00008___ 750 ACAAACATCTTCGGGTAAAGAAAGAATTATCGTTACAGAGTTACCTTACC 799
|.|.|||||.|||||.||||||||||||||.||.|||||..|.|||||.|
RBAM_000070__ 672 AGAGACATCATCGGGAAAAGAAAGAATTATTGTCACAGAACTTCCTTATC 721
BSNT_00008___ 800 AAGTAAATAAGGCGAAATTAATTGAGAAAATTGCTGATCTCGTAAGGGAC 849
|.||.||.||.||||.|||||||||.|||||.||.|||||.||..|||||
RBAM_000070__ 722 AGGTGAACAAAGCGAGATTAATTGAAAAAATCGCAGATCTTGTCCGGGAC 771
BSNT_00008___ 850 AAAAAGATAGAGGGTATCACAGATCTGCGTGATGAGTCAGATCGTACAGG 899
|||||.||.||.||.||.||.||||||||.||.||.||.||.||||..||
RBAM_000070__ 772 AAAAAAATCGAAGGAATTACGGATCTGCGAGACGAATCCGACCGTAACGG 821
BSNT_00008___ 900 TATGAGAATTGTCATTGAAATAAGACGCGATGCCAATGCAAATGTCATCT 949
.||||||||.||||||||.||..|.||.||.||||||||..|.|||||.|
RBAM_000070__ 822 AATGAGAATCGTCATTGAGATCCGCCGTGACGCCAATGCTCACGTCATTT 871
BSNT_00008___ 950 TAAACAATCTGTACAAACAAACTGCTCTACAAACATCTTTTGGCATCAAC 999
|.||.||.||||||||||||||.||.||.||.||.|||||.||.||||||
RBAM_000070__ 872 TGAATAACCTGTACAAACAAACGGCCCTGCAGACGTCTTTCGGAATCAAC 921
BSNT_00008___ 1000 CTGCTTGCACTTGTTGATGGCCAGCCGAAAGTTTTAACTCTTAAGCAATG 1049
|||||.||.||.|||||.||.||||||||.||..|||..||.||.|||||
RBAM_000070__ 922 CTGCTGGCGCTCGTTGACGGACAGCCGAAGGTACTAAGCCTGAAACAATG 971
BSNT_00008___ 1050 CCTGGAGCATTACCTTGACCACCAAAAAGTTGTCATTAGACGCCGTACTG 1099
.|||||||||||.|||||.||||||||.|||||.||..|.|||.|.||.|
RBAM_000070__ 972 TCTGGAGCATTATCTTGATCACCAAAAGGTTGTGATCCGGCGCAGAACGG 1021
BSNT_00008___ 1100 CTTATGAATTGCGTAAAGCAGAAGCGAGAGCTCATATCTTGGAAGGATTG 1149
||||.|||.|.||.|||||.||||||||||||||.||..|||||||.||.
RBAM_000070__ 1022 CTTACGAACTCCGCAAAGCGGAAGCGAGAGCTCACATTCTGGAAGGTTTA 1071
BSNT_00008___ 1150 AGAGTTGCACTGGATCATCTCGATGCAGTTATCTCCCTTATCCGTAATTC 1199
|||.||||.||.||||||.|.|||||.|||||.||.||||||||.|||||
RBAM_000070__ 1072 AGAATTGCTCTCGATCATTTAGATGCCGTTATTTCTCTTATCCGCAATTC 1121
BSNT_00008___ 1200 TCAAACGGCTGAAATTGCGAGAACAGGTTTAATTGAACAATTCTCACTGA 1249
.||.||||||||||||||||||||||||||.||.||||||||||||||||
RBAM_000070__ 1122 CCAGACGGCTGAAATTGCGAGAACAGGTTTGATCGAACAATTCTCACTGA 1171
BSNT_00008___ 1250 CAGAGAAGCAAGCACAAGCGATCCTTGACATGAGGCTCCAGCGTTTAACG 1299
|.||.||.|||||.|||||.||.||.||.|||.|.||.|||||.|||||.
RBAM_000070__ 1172 CTGAAAAACAAGCGCAAGCCATTCTGGATATGCGCCTTCAGCGATTAACC 1221
BSNT_00008___ 1300 GGACTGGAACGTGAAAAGATCGAAGAAGAATACCAATCTCTTGTTAAATT 1349
||.|||||.||.||||||||.|||||.|||||.|||||.||||||....|
RBAM_000070__ 1222 GGTCTGGAGCGCGAAAAGATTGAAGAGGAATATCAATCACTTGTTGCGCT 1271
BSNT_00008___ 1350 AATTGCAGAGCTAAAAGACATCTTGGCAAATGAATATAAAGTGCTTGAGA 1399
.||.||.|||||.|||||.||.||.||.||||||...|.|||.|||||||
RBAM_000070__ 1272 TATCGCCGAGCTGAAAGATATTTTAGCCAATGAAGCAAGAGTTCTTGAGA 1321
BSNT_00008___ 1400 TCATTCGTGAAGAACTCACGGAAATCAAAGAGCGTTTTAACGATGAAAGA 1449
|||||||||||||.||||..|||||||||||||||||.||.|||||.|||
RBAM_000070__ 1322 TCATTCGTGAAGAGCTCAATGAAATCAAAGAGCGTTTCAATGATGAGAGA 1371
BSNT_00008___ 1450 CGTACTGAGATCGTCACTTCTGGACTGGAGACAATTGAAGATGAAGATCT 1499
||.|||||.|||||.||.||.||.||.||.||||||||||||||||||||
RBAM_000070__ 1372 CGCACTGAAATCGTGACGTCCGGTCTTGAAACAATTGAAGATGAAGATCT 1421
BSNT_00008___ 1500 CATCGAGAGAGAAAATATCGTAGTTACTCTGACGCACAACGGATACGTCA 1549
.||||||||||||||||||||..|.||.|||||.||.|||||.||.||.|
RBAM_000070__ 1422 TATCGAGAGAGAAAATATCGTCATCACACTGACCCATAACGGCTATGTTA 1471
BSNT_00008___ 1550 AACGTCTTCCTGCATCAACTTACCGCAGTCAAAAACGGGGCGGAAAAGGT 1599
||||.||.||.||.||.||.||||||||.||||||||||||||||||||.
RBAM_000070__ 1472 AACGGCTCCCAGCGTCCACATACCGCAGCCAAAAACGGGGCGGAAAAGGC 1521
BSNT_00008___ 1600 GTACAAGGTATGGGAACAAACGAAGATGATTTCGTTGAACATTTGATATC 1649
|||||.||.||||||||.||.||||||||.||.||.||||||||.||.||
RBAM_000070__ 1522 GTACAGGGAATGGGAACGAATGAAGATGACTTTGTGGAACATTTAATTTC 1571
BSNT_00008___ 1650 TACGTCAACTCATGACACGATTCTCTTCTTCTCGAACAAGGGGAAAGTGT 1699
.||.|||||.||.||.|||||.||.||||||||.||.||.|||||.||.|
RBAM_000070__ 1572 CACATCAACGCACGATACGATCCTGTTCTTCTCTAATAAAGGGAAGGTAT 1621
BSNT_00008___ 1700 ATCGTGCAAAAGGGTATGAAATCCCTGAATACGGCAGAACGGCAAAAGGA 1749
|.|||.|.|||||.|||||||||||||||||||||.|.|||||||||||.
RBAM_000070__ 1622 ACCGTTCTAAAGGATATGAAATCCCTGAATACGGCCGTACGGCAAAAGGC 1671
BSNT_00008___ 1750 ATCCCGATTATTAACCTGCTGGAGGTAGAAAAGGGTGAGTGGATCAACGC 1799
||.||||||||||||||.||||||||.|||||.||.||.|||||.||.||
RBAM_000070__ 1672 ATTCCGATTATTAACCTTCTGGAGGTTGAAAAAGGCGAATGGATTAATGC 1721
BSNT_00008___ 1800 GATTATTCCAGT---CACGGAATTCAATGCGGAGCTTTACCTTTTCTTCA 1846
.||||||||.|| |||| ||..|||.|||||..|||||.|||||.|
RBAM_000070__ 1722 CATTATTCCGGTCAGCACG---TTTGATGAGGAGCAATACCTCTTCTTTA 1768
BSNT_00008___ 1847 CTACAAAGCATGGGGTTTCAAAACGAACATCACTATCTCAATTCGCTAAT 1896
|.||.||.||.|||||.||.|||||.||..||||.||.||.||.||.|||
RBAM_000070__ 1769 CGACCAAACAAGGGGTGTCGAAACGTACGGCACTGTCCCAGTTTGCGAAT 1818
BSNT_00008___ 1897 ATCCGCAACAATGGTCTAATCGCTCTGAGTCTTCGTGAAGACGATGAACT 1946
||.||.||.||.||.||.|||||.||..||||.||.||||||||||||||
RBAM_000070__ 1819 ATACGGAATAACGGGCTGATCGCCCTAGGTCTCCGGGAAGACGATGAACT 1868
BSNT_00008___ 1947 GATGGGTGTACGTCTGACTGATGGCACAAAACAAATCATCATTGGAACGA 1996
|||||..||.||.||||||||.||||..||||||||||||||.|||||||
RBAM_000070__ 1869 GATGGCCGTCCGCCTGACTGACGGCAAGAAACAAATCATCATCGGAACGA 1918
BSNT_00008___ 1997 AAAACGGTTTACTGATCCGTTTCCCTGAAACAGATGTTCGGGAGATGGGA 2046
|.||||||||.||||||||||||||||||..||||||..|..|.||||||
RBAM_000070__ 1919 AGAACGGTTTGCTGATCCGTTTCCCTGAAGAAGATGTAAGACAAATGGGA 1968
BSNT_00008___ 2047 AGAACTGCGGCGGGCGTAAAAGGCATCACCCTGACGGATGACGACGTTGT 2096
.|.||.||.|||||.||.|||||||||||.|||||.||.||.||.|||||
RBAM_000070__ 1969 CGCACAGCTGCGGGTGTTAAAGGCATCACGCTGACAGACGATGATGTTGT 2018
BSNT_00008___ 2097 TGTCGGCATGGAGATATTAGAGGAAGAATCACACGTCCTTATCGTTACTG 2146
.||.|||||||||||..|.||.|||||.||.||||||||.||.||.||.|
RBAM_000070__ 2019 GGTAGGCATGGAGATTCTTGAAGAAGACTCCCACGTCCTCATAGTGACAG 2068
BSNT_00008___ 2147 AAAAAGGGTACGGAAAACGAACTCCGGCTGAAGAGTACAGAACCCAAAGC 2196
||||.||.|||||.|||||.||.||||||..|||.||||||...||||||
RBAM_000070__ 2069 AAAACGGCTACGGCAAACGCACACCGGCTTCAGAATACAGAGTTCAAAGC 2118
BSNT_00008___ 2197 CGGGGCGGAAAAGGACTCAAAACAGCGAAAATCACCGAGAACAACGGCCA 2246
||||||||||||||.||.||||||...||||||||.||.|.||||||.|.
RBAM_000070__ 2119 CGGGGCGGAAAAGGCCTTAAAACATGTAAAATCACTGACAGCAACGGTCC 2168
BSNT_00008___ 2247 ACTAGTAGCAGTGAAAGCTACTAAAGGTGAAGAGGATCTAATGATTATTA 2296
..|||||.|.||||||||.||.|||||.||||||||..||||||||||||
RBAM_000070__ 2169 GTTAGTAACCGTGAAAGCAACAAAAGGCGAAGAGGACTTAATGATTATTA 2218
BSNT_00008___ 2297 CAGCTAGCGGCGTACTCATCAGAATGGACATCAATGATATCTCCATCACC 2346
|.||.||||||||..|.|||||||||||.||.|||||||||||||..||.
RBAM_000070__ 2219 CGGCAAGCGGCGTGTTAATCAGAATGGATATTAATGATATCTCCACTACG 2268
BSNT_00008___ 2347 GGACGTGTCACTCAAGGTGTGCGTCTCATCAGAATGGCAGAAGAAGAGCA 2396
|||||.||.||.|||||.||.|||||.|||.|.|||.|.||..|||||||
RBAM_000070__ 2269 GGACGCGTAACACAAGGCGTCCGTCTGATCCGCATGTCTGATCAAGAGCA 2318
BSNT_00008___ 2397 TGTTGCTACAGTAGCTTTAGTAGAGAAAAACGAAGAAGATGAGAATGAAG 2446
|||.||.||.||.||..|.||.||.||.||.||||||||...| |
RBAM_000070__ 2319 TGTAGCCACTGTGGCGCTTGTGGAAAAGAATGAAGAAGAGCCG------G 2362
BSNT_00008___ 2447 AAGAACAAGAAGAAGTGTGA 2466
|||||...||||||||.|.|
RBAM_000070__ 2363 AAGAAACGGAAGAAGTATAA 2382
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