Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00006 and RBAM_000060
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:46
# Commandline: needle
# -asequence dna-align/BSNT_00006___gyrB.1.9828.seq
# -bsequence dna-align/RBAM_000060___gyrB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00006___gyrB-RBAM_000060___gyrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00006___gyrB-RBAM_000060___gyrB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00006___gyrB
# 2: RBAM_000060___gyrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1918
# Identity: 1569/1918 (81.8%)
# Similarity: 1569/1918 (81.8%)
# Gaps: 2/1918 ( 0.1%)
# Score: 6437.0
#
#
#=======================================
BSNT_00006___ 1 ATGGAACAGCAGCAAAACAGTTATGATGAAAATCAGATACAGGTACTAGA 50
|||||||||||||||||.|||||||||||.|||||||||||||||.||||
RBAM_000060__ 1 ATGGAACAGCAGCAAAATAGTTATGATGAGAATCAGATACAGGTATTAGA 50
BSNT_00006___ 51 AGGATTGGAAGCTGTTCGTAAAAGACCGGGGATGTATATCGGTTCGACAA 100
|||.||||||||||||||.||.||||||||||||||.|||||.||.||.|
RBAM_000060__ 51 AGGTTTGGAAGCTGTTCGAAAGAGACCGGGGATGTACATCGGATCAACTA 100
BSNT_00006___ 101 ACAGCAAAGGCCTTCACCACCTGGTATGGGAAATTGTCGACAATAGTATT 150
||||||||||||||||||||.||||.||||||||.||||||||.||||||
RBAM_000060__ 101 ACAGCAAAGGCCTTCACCACTTGGTGTGGGAAATCGTCGACAACAGTATT 150
BSNT_00006___ 151 GACGAAGCCCTCGCCGGTTATTGTACGGATATCAATATCCAAATCGAAAA 200
|||||||||||.||||||||||||||.|||||.||.|||.|.||.|||||
RBAM_000060__ 151 GACGAAGCCCTGGCCGGTTATTGTACAGATATTAACATCGAGATTGAAAA 200
BSNT_00006___ 201 AGACAACAGTATCACGGTTGTAGATAATGGCCGCGGTATTCCAGTCGGTA 250
|||.|||||.||.||.|||...||.||.||.|||||.|||||.|||||||
RBAM_000060__ 201 AGATAACAGCATTACCGTTAAGGACAACGGGCGCGGAATTCCGGTCGGTA 250
BSNT_00006___ 251 TTCATGAAAAAATGGGCCGTCCTGCGGTAGAAGTCATTATGACGGTACTT 300
|.||.||.||.||||||||.||||||||.|||||.||.|||||.||.||.
RBAM_000060__ 251 TCCAGGAGAAGATGGGCCGCCCTGCGGTTGAAGTTATCATGACCGTTCTC 300
BSNT_00006___ 301 CATGCCGGAGGAAAATTTGACGGAAGCGGCTATAAAGTATCCGGAGGATT 350
||.|||||.||.|||||||||||||||||.||||||||||||||.||..|
RBAM_000060__ 301 CACGCCGGCGGTAAATTTGACGGAAGCGGATATAAAGTATCCGGCGGTCT 350
BSNT_00006___ 351 ACACGGTGTAGGTGCGTCTGTCGTAAACGCACTATCAACAGAGCTTGATG 400
.|||||||||||.|||||.|||||||||||..|.||.||....|||||.|
RBAM_000060__ 351 TCACGGTGTAGGGGCGTCCGTCGTAAACGCCTTGTCGACCACTCTTGACG 400
BSNT_00006___ 401 TGACGGTTCACCGTGACGGTAAAATTCACCGCCAAACTTATAAACGCGGA 450
|.||||||||.||||||||.|||||.|||...||..|.||..|.|||||.
RBAM_000060__ 401 TTACGGTTCATCGTGACGGAAAAATCCACTATCAGGCGTACGAGCGCGGT 450
BSNT_00006___ 451 GTTCCGGTTACAGACCTTGAAATCATTGGCGAAACGGATCATACAGGAAC 500
||.||.||..|.||.||||||.|.||.||.||.||.|||.|.||.|||||
RBAM_000060__ 451 GTACCTGTGGCTGATCTTGAAGTGATCGGTGATACTGATAAGACCGGAAC 500
BSNT_00006___ 501 GACGACACATTTTGTCCCGGACCCTGAAATTTTCTCAGAAACAACCGAGT 550
||..||.||.||.||.|||||.||.|||||.|||..||||||||.||..|
RBAM_000060__ 501 GATTACGCACTTCGTTCCGGATCCGGAAATCTTCAAAGAAACAATCGTAT 550
BSNT_00006___ 551 ATGATTATGATCTGCTTGCCAACCGCGTACGTGAATTAGCCTTTTTAACA 600
|.||.||||||||||||.|.|||||.||.||.|||||.|||||..|.|||
RBAM_000060__ 551 ACGACTATGATCTGCTTTCAAACCGTGTCCGGGAATTGGCCTTCCTGACA 600
BSNT_00006___ 601 AAGGGCGTAAACATCACGATTGAGGATAAACGTGAAGGACAAGAGCGCAA 650
||.||||||||||||||||||||.||.|||||||||||||||||.||.||
RBAM_000060__ 601 AAAGGCGTAAACATCACGATTGAAGACAAACGTGAAGGACAAGAACGGAA 650
BSNT_00006___ 651 AAATGAATACCATTACGAAGGCGGAATTAAAAGTTATGTAGAGTATTTAA 700
|||.||.|||||.||||||||||||||.|||||.|||||.|||||.||||
RBAM_000060__ 651 AAACGAGTACCACTACGAAGGCGGAATCAAAAGCTATGTTGAGTACTTAA 700
BSNT_00006___ 701 ACCGCTCTAAAGAGGTTGTCCATGAAGAGCCGATTTACATTGAAGGCGAA 750
||||.||.|||||.||.||.|||||||||||||||||.||.||||||||.
RBAM_000060__ 701 ACCGTTCCAAAGAAGTCGTTCATGAAGAGCCGATTTATATCGAAGGCGAG 750
BSNT_00006___ 751 AAGGACGGCATTACGGTTGAAGTGGCTTTGCAATACAATGACAGCTACAC 800
||.||||||||.|||||||||||.||.|||||||||||.||||||||.||
RBAM_000060__ 751 AAAGACGGCATAACGGTTGAAGTTGCGTTGCAATACAACGACAGCTATAC 800
BSNT_00006___ 801 AAGCAACATTTACTCGTTTACAAACAACATTAACACGTACGAAGGCGGTA 850
||||||||||||.||.||.|||||.|||||.|||||.|||||||||||.|
RBAM_000060__ 801 AAGCAACATTTATTCTTTCACAAATAACATCAACACATACGAAGGCGGGA 850
BSNT_00006___ 851 CCCATGAAGCTGGCTTCAAAACGGGCCTGACTCGTGTTATCAACGATTAC 900
|.||.|||||.||.||.|||||.||.|||||.|||||.||.|||||.||.
RBAM_000060__ 851 CGCACGAAGCCGGATTTAAAACCGGTCTGACCCGTGTCATAAACGACTAT 900
BSNT_00006___ 901 GCCAGAAAAAAAGGGCTTATTAAAGAAAATGATCCAAACCTAAGCGGAGA 950
||.||||.|||||||.||.|.||||||||||||||.||..|||||||.||
RBAM_000060__ 901 GCAAGAAGAAAAGGGATTTTCAAAGAAAATGATCCGAATTTAAGCGGGGA 950
BSNT_00006___ 951 TGACGTAAGGGAAGGGCTGACAGCGATTATTTCAATCAAACACCCTGATC 1000
|||.||.||.|||||||||||.||.|||||||||||.||.||||||||||
RBAM_000060__ 951 TGATGTGAGAGAAGGGCTGACTGCCATTATTTCAATTAAGCACCCTGATC 1000
BSNT_00006___ 1001 CGCAGTTTGAGGGCCAAACGAAAACAAAGCTGGGCAACTCAGAAGCACGG 1050
||||.||.||.||.||.||||||||.|||||.||||||||.|||||..|.
RBAM_000060__ 1001 CGCAATTCGAAGGGCAGACGAAAACGAAGCTCGGCAACTCCGAAGCGAGA 1050
BSNT_00006___ 1051 ACGATCACCGATACGTTATTTTCTACGGCGATGGAAACATTTATGCTGGA 1100
||||||||.||||||.|.||||||.|.|||.||||||||||..|.||.||
RBAM_000060__ 1051 ACGATCACTGATACGCTGTTTTCTTCTGCGCTGGAAACATTCCTTCTTGA 1100
BSNT_00006___ 1101 AAATCCAGATGCAGCCAAAAAAATTGTCGATAAAGGCTTAATGGCGGCAA 1150
||||||.||..|||||...|||||.||.||.|||||.||||||||.||||
RBAM_000060__ 1101 AAATCCGGACTCAGCCCGCAAAATCGTTGAAAAAGGTTTAATGGCCGCAA 1150
BSNT_00006___ 1151 GAGCAAGAATGGCTGCGAAAAAAGCCCGTGAACTAACACGTCGTAAGAGT 1200
||||..|.|||||.|||||||||||.||.|||.|.||.||.||.||.|||
RBAM_000060__ 1151 GAGCGCGGATGGCAGCGAAAAAAGCGCGGGAATTGACCCGCCGCAAAAGT 1200
BSNT_00006___ 1201 GCTTTGGAAATTTCAAACCTGCCCGGTAAGTTAGCGGACTGCTCTTCAAA 1250
||..|.||.|||||.||.|||||.||.||..|.||||||||.|||||.||
RBAM_000060__ 1201 GCGCTTGAGATTTCCAATCTGCCGGGCAAACTGGCGGACTGTTCTTCTAA 1250
BSNT_00006___ 1251 AGATCCGAGCATCTCCGAGTTATATATCGTAGAGGGTGACTCTGCCGGAG 1300
||||||||||||.||||||.|.|||||||||||||||||||||||.||.|
RBAM_000060__ 1251 AGATCCGAGCATTTCCGAGCTGTATATCGTAGAGGGTGACTCTGCGGGCG 1300
BSNT_00006___ 1301 GATCTGCTAAACAAGGACGCGACAGACATTTCCAAGCCATTTTGCCGCTT 1350
||||.||.|||||.|||||.|||.|.|||||||||||||||.|||||||.
RBAM_000060__ 1301 GATCAGCGAAACAGGGACGGGACCGTCATTTCCAAGCCATTCTGCCGCTG 1350
BSNT_00006___ 1351 AGAGGTAAAATCCTAAACGTTGAAAAGGCCAGACTGGATAAAATCCTTTC 1400
.|.|||||.||.||.||||||||.||.||||||||.||||||||.||.||
RBAM_000060__ 1351 CGCGGTAAGATTCTGAACGTTGAGAAAGCCAGACTTGATAAAATTCTCTC 1400
BSNT_00006___ 1401 TAACAACGAAGTTCGCTCTATGATCACAGCGCTCGGCACAGGTATTGGGG 1450
.|||||.||.||..|.||.||||||||.||.|||||.|||||.||.||.|
RBAM_000060__ 1401 AAACAATGAGGTCAGATCAATGATCACGGCCCTCGGAACAGGAATCGGAG 1450
BSNT_00006___ 1451 AAGACTTCAACCTTGAGAAAGCCCGTTACCACAAAGTTGTCATTATGACA 1500
||||.||.||.|||||.|||||.|||||.||.|||||.|||||.|||||.
RBAM_000060__ 1451 AAGATTTTAATCTTGAAAAAGCGCGTTATCATAAAGTGGTCATCATGACG 1500
BSNT_00006___ 1501 GATGCCGATGTTGACGGCGCGCACATCAGAACACTGCTGTTAACGTTCTT 1550
||||||||||||||||||||.|||||||||||.||..|.|||||||||||
RBAM_000060__ 1501 GATGCCGATGTTGACGGCGCCCACATCAGAACGCTTTTATTAACGTTCTT 1550
BSNT_00006___ 1551 TTACAGATATATGCGCCAAATTATCGAAAATGGCTACGTGTACATTGCAC 1600
.||||||||.|||||..||||.||||||||.|||||.||.||||||||.|
RBAM_000060__ 1551 CTACAGATACATGCGGGAAATCATCGAAAACGGCTATGTCTACATTGCCC 1600
BSNT_00006___ 1601 AGCCGCCGCTCTACAAGGTTCAACAGGGGAAACGTGTTGAATATGCGTAC 1650
||||||||||.||.||.||.||.|||||.|||||.||.|||||.||.||.
RBAM_000060__ 1601 AGCCGCCGCTTTATAAAGTGCAGCAGGGAAAACGGGTGGAATACGCTTAT 1650
BSNT_00006___ 1651 AATGACAAGGAGCTTGAAGAGCTGTTAAAAACTCTTCCTCAAACGCCTAA 1700
||.||.|||.|||||||.||||||||||||...|||||.|||.|.|||||
RBAM_000060__ 1651 AACGATAAGCAGCTTGATGAGCTGTTAAAAGAGCTTCCGCAATCACCTAA 1700
BSNT_00006___ 1701 GCCTGGACTGCAGCGTTACAAAGGTCTTGGTGAAATGAATGCCACCCAGC 1750
|||.||.||.||||||||.|||||||||||.||||||||.||.||.||||
RBAM_000060__ 1701 GCCCGGCCTCCAGCGTTATAAAGGTCTTGGAGAAATGAACGCGACTCAGC 1750
BSNT_00006___ 1751 TATGGGAGACAACCATGGATCCTAGC-TCCAGAACACTTCTTCAGGTAAC 1799
|.|||||.||.||.|||||.||| || .|||||||.|||||.||.||.|.
RBAM_000060__ 1751 TTTGGGAAACGACAATGGACCCT-GCGACCAGAACGCTTCTGCAAGTCAA 1799
BSNT_00006___ 1800 TCTTGAAGATGCAATGGATGCGGACGAGACTTTTGAAATGCTTATGGGCG 1849
||||||||||||||||||.||.||||||||||||||||||||.|||||.|
RBAM_000060__ 1800 TCTTGAAGATGCAATGGACGCTGACGAGACTTTTGAAATGCTGATGGGTG 1849
BSNT_00006___ 1850 ACAAAGTAGAACCGCGCCGAAACTTCATAGAAGCGAATGCGAGATACGTT 1899
||||||||||||||||..||||||||||||||||.||.||.||||||||.
RBAM_000060__ 1850 ACAAAGTAGAACCGCGGAGAAACTTCATAGAAGCAAACGCCAGATACGTG 1899
BSNT_00006___ 1900 AAAAATCTTGACATCTAA 1917
|||||||||||.||.|||
RBAM_000060__ 1900 AAAAATCTTGATATTTAA 1917
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