Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00004 and RBAM_000040
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:46
# Commandline: needle
# -asequence dna-align/BSNT_00004___recF.1.9828.seq
# -bsequence dna-align/RBAM_000040___recF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00004___recF-RBAM_000040___recF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00004___recF-RBAM_000040___recF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00004___recF
# 2: RBAM_000040___recF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1113
# Identity: 939/1113 (84.4%)
# Similarity: 939/1113 (84.4%)
# Gaps: 0/1113 ( 0.0%)
# Score: 3999.0
#
#
#=======================================
BSNT_00004___ 1 TTGTATATCCAGAACTTAGAACTTTCATCTTACCGCAACTACGACCATGC 50
|||||||||||.||.||||||.|..||||.|||||.||.||.||.|..||
RBAM_000040__ 1 TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGC 50
BSNT_00004___ 51 TGAACTTCAATTTGAAAATAAAGTAAATGTGATCATCGGAGAAAACGCCC 100
|||.||||||||.|||||.||.||.||||||||||||||.|||||.||||
RBAM_000040__ 51 TGAGCTTCAATTCGAAAACAAGGTGAATGTGATCATCGGGGAAAATGCCC 100
BSNT_00004___ 101 AGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAA 150
|.||.||.||.||.||.|||||.||.|||||||||.|.||.|||||.|||
RBAM_000040__ 101 AAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAA 150
BSNT_00004___ 151 TCGCACCGGACATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTA 200
||.|||||.||.||||||||||||||||||||||||||||||.|||||||
RBAM_000040__ 151 TCACACCGCACCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTA 200
BSNT_00004___ 201 TGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCGATCCCGATGC 250
||||||||||||.||||||||||||||||.||||||||..||||||||||
RBAM_000040__ 201 TGCTAAAATAGAAGGAAGAGTGATGAAGCGAAACGGGGACATCCCGATGC 250
BSNT_00004___ 251 AGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAA 300
||||.||||||||||||||.||||||||||||||||||||||||||.||.
RBAM_000040__ 251 AGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAG 300
BSNT_00004___ 301 CAGCAAAAGCTCAGCCAGTATGTCGGGGCCCTCAACACCATTATGTTCGC 350
||||||||.|||||.|||||||||||.||.||.||||||||||||||.||
RBAM_000040__ 301 CAGCAAAAACTCAGTCAGTATGTCGGAGCGCTGAACACCATTATGTTTGC 350
BSNT_00004___ 351 GCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT 400
.||.||.|||||||||||.||.||.|||||||||||.|||||.|||.|.|
RBAM_000040__ 351 CCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT 400
BSNT_00004___ 401 TTCTTGACATGGAAATTGGACAGGTTTCTCCCGTCTATCTTCATGATCTT 450
||||.||.|||||.||.||.|||||||||.||||.|||||..|||||.|.
RBAM_000040__ 401 TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTA 450
BSNT_00004___ 451 TCTCTTTACCAGAAAATCCTTTCCCAGCGGAATCATTTTTTGAAACAGCT 500
||||||||.||.|||||||||||.|||||||||||||||.||||||||||
RBAM_000040__ 451 TCTCTTTATCAAAAAATCCTTTCACAGCGGAATCATTTTCTGAAACAGCT 500
BSNT_00004___ 501 GCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATC 550
|||||...|.|||||.|||||||||||.|||||.||.|||||.||.||||
RBAM_000040__ 501 GCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATC 550
BSNT_00004___ 551 AGCTTATAGAAGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACA 600
||||.||.||||..||.||||||||.||||..|||||.|||||||||||.
RBAM_000040__ 551 AGCTGATTGAAGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACG 600
BSNT_00004___ 601 GCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCATCTCAAGAGG 650
||.|||||.||.||||||||||||||.||||||.|.|||||.||..|.||
RBAM_000040__ 601 GCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCATTTCCCGGGG 650
BSNT_00004___ 651 GCTTGAAGAACTTACCCTGAAATACCATACAGCTCTTGATGTATCAGATC 700
.|||||||||||.||.||.||.||.||.||.||.||||||||||||||||
RBAM_000040__ 651 ACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATC 700
BSNT_00004___ 701 CCCTAGATTTGTCGAAAATAGGAGATAGCTATCAAGAAGCGTTTTCTAAA 750
||..||||||||||||||||||..|.|||||.||.||..|.|||||.|||
RBAM_000040__ 701 CCAAAGATTTGTCGAAAATAGGTAACAGCTACCAGGAGTCTTTTTCGAAA 750
BSNT_00004___ 751 TTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG 800
||||.||||||||||||.||.||.||.||.||..|.|..||.||.|||||
RBAM_000040__ 751 TTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG 800
BSNT_00004___ 801 CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTT 850
.||||||||.|||||.|||||||||||||||||||||||||||||.||||
RBAM_000040__ 801 GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTT 850
BSNT_00004___ 851 CTCAAGGACAGCAGCGAACGACGGCGTTGTCCCTTAAGCTGGCGGAGATT 900
|.||.|||||||||||.||||||||.|||||..|.||||||||.||.||.
RBAM_000040__ 851 CGCAGGGACAGCAGCGTACGACGGCTTTGTCTTTGAAGCTGGCCGAAATA 900
BSNT_00004___ 901 GACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGA 950
||..||||.||||||||||||||||||||.|||||||||||.||||||||
RBAM_000040__ 901 GATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGA 950
BSNT_00004___ 951 TGTACTGAGTGAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGA 1000
||||||.||.||.|||||||||||.||.|||||.||.|||||||||||||
RBAM_000040__ 951 TGTACTAAGCGAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGA 1000
BSNT_00004___ 1001 TCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGTTGATGGCATT 1050
|||||||||||||.||.||.||||||||.|||||||||||.|||||||||
RBAM_000040__ 1001 TCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGTGGATGGCATT 1050
BSNT_00004___ 1051 GATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGC 1100
||.|||||.|||||||.||||||||||||||||||||||.||||.|||.|
RBAM_000040__ 1051 GACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTAC 1100
BSNT_00004___ 1101 GTTAGTGAAGTGA 1113
|||||||||||||
RBAM_000040__ 1101 GTTAGTGAAGTGA 1113
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