Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00002 and RBAM_000020
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:46
# Commandline: needle
# -asequence dna-align/BSNT_00002___dnaN.1.9828.seq
# -bsequence dna-align/RBAM_000020___dnaN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00002___dnaN-RBAM_000020___dnaN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00002___dnaN-RBAM_000020___dnaN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00002___dnaN
# 2: RBAM_000020___dnaN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1142
# Identity: 942/1142 (82.5%)
# Similarity: 942/1142 (82.5%)
# Gaps: 10/1142 ( 0.9%)
# Score: 3878.5
#
#
#=======================================
BSNT_00002___ 1 ATGAAATTCACGATTCAAAAAGATCGTCTTGTTGAAAGTGTCCAAGATGT 50
||||||||.||||||||||||||||||.|.||.||||||||.|||||.||
RBAM_000020__ 1 ATGAAATTTACGATTCAAAAAGATCGTTTAGTCGAAAGTGTACAAGACGT 50
BSNT_00002___ 51 ATTAAAAGCAGTTTCATCCAGAACCACGATTCCCATTCTGACTGGTATTA 100
..|||||||.|||||||||||||||||.|||||||||||.||.|||||||
RBAM_000020__ 51 TCTAAAAGCCGTTTCATCCAGAACCACAATTCCCATTCTCACCGGTATTA 100
BSNT_00002___ 101 AAATTGTTGCATCAGATGATGGAGTATCCTTTACAGGGAGTGACTCAGAT 150
|.||.||.||.||||||||.||||||||.||.|||||.||||||||.|||
RBAM_000020__ 101 AGATCGTCGCCTCAGATGAAGGAGTATCTTTCACAGGAAGTGACTCTGAT 150
BSNT_00002___ 151 ATTTCTATTGAATCCTTCATTCCAAAAGAAGAAGGAGATAAAGAAATCGT 200
|||||.||.||.||.||||||||.||||||||.|..||||||||||||||
RBAM_000020__ 151 ATTTCAATCGAGTCATTCATTCCGAAAGAAGATGATGATAAAGAAATCGT 200
BSNT_00002___ 201 CACTATTGAACAGCCCGGAAGCATCGTTTTACAGGCTCGCTTTTTTAGTG 250
.||.||.||.|||||.|||||.|||||..|.||.||.||.||.||.||.|
RBAM_000020__ 201 GACGATCGATCAGCCGGGAAGTATCGTGCTGCAAGCGCGTTTCTTCAGCG 250
BSNT_00002___ 251 AAATTGTAAAAAAATTGCCGATGGCAACTGTAGAAATTGAAGTCCAAAAT 300
||||.||.||||||.||||||||||.|||||.|||||.|||||.||||||
RBAM_000020__ 251 AAATCGTTAAAAAACTGCCGATGGCGACTGTTGAAATCGAAGTTCAAAAT 300
BSNT_00002___ 301 CAGTATTTGACGATTATCCGTTCTGGTAAAGCTGAATTTAATCTAAACGG 350
||.|||||.||||||||||||||.||.|||||.|||||||||.|||||||
RBAM_000020__ 301 CAATATTTAACGATTATCCGTTCCGGAAAAGCCGAATTTAATTTAAACGG 350
BSNT_00002___ 351 ACTGGATGCTGACGAGTATCCGCACTTGCCGCAGATTGAAGAGCATCATG 400
.||.|||||.||.||.||||||||..|||||||.||.|||||||||||.|
RBAM_000020__ 351 CCTTGATGCAGATGAATATCCGCATCTGCCGCAAATCGAAGAGCATCACG 400
BSNT_00002___ 401 CGATTCAGATCCCAACTGATTTGTTAAAAAATCTAATCAGACAAACAGTA 450
|.||||||||.||.||.|||.|.||.|||||.||.||..|.|||||.||.
RBAM_000020__ 401 CCATTCAGATTCCGACGGATCTTTTGAAAAACCTGATTCGCCAAACCGTG 450
BSNT_00002___ 451 TTTGCAGTGTCCACCTCAGAAACACGCCCTATCTTGACAGGTGTAAACTG 500
||.||.||||||.|||||||||||||||||||||||||||||||||||||
RBAM_000020__ 451 TTCGCTGTGTCCGCCTCAGAAACACGCCCTATCTTGACAGGTGTAAACTG 500
BSNT_00002___ 501 GAAAGTGGAGCAAA--GTGAATTATTATGCACTGCAACGGATAGCCACCG 548
||||||.|| ||| |||||||||||||||||||.||||||||||||||
RBAM_000020__ 501 GAAAGTCGA--AAACGGTGAATTATTATGCACTGCCACGGATAGCCACCG 548
BSNT_00002___ 549 TCTTGCATTAAGAAAGGCCAAACTTGATATTCCAGAAGACAGATCTTATA 598
.|||||.|||||||||||.||.|||||||||||.||||||||.|||||||
RBAM_000020__ 549 ACTTGCTTTAAGAAAGGCGAAGCTTGATATTCCGGAAGACAGCTCTTATA 598
BSNT_00002___ 599 ACGTCGTGATTCCGGGAAAAAGTTTAACTGAACTCAGCAAGATTTTAGAT 648
||||.||.|||||.||.|||||.|||||.||.||.|||||.|||.|.|||
RBAM_000020__ 599 ACGTGGTCATTCCCGGGAAAAGCTTAACCGAGCTGAGCAAAATTCTTGAT 648
BSNT_00002___ 649 GACAACCAGGAACTTGTAGATATCGTCATCACAGAAACCCAAGTTCTGTT 698
||||||||.|||||.||.|||||||||||.||||||||.|||||||||||
RBAM_000020__ 649 GACAACCAAGAACTGGTTGATATCGTCATTACAGAAACTCAAGTTCTGTT 698
BSNT_00002___ 699 TAAAGCGAAAAACGTCTTATTCTTCTCACGGCTTCTGGACGGGAATTATC 748
.||||||||||||||.||.|||||||||.|..|.||.|||||.||.||||
RBAM_000020__ 699 CAAAGCGAAAAACGTATTGTTCTTCTCAAGATTGCTTGACGGAAACTATC 748
BSNT_00002___ 749 CAGACACAACCAGCCTGATTCCGCAAGACAGCAAAACAGAAATCATTGTG 798
|.|||||.||||||.|.||||||||.||.||||||||.||||||.|.|||
RBAM_000020__ 749 CGGACACGACCAGCTTAATTCCGCAGGAAAGCAAAACGGAAATCGTCGTG 798
BSNT_00002___ 799 AACACAAAAGAATTCCTTCAGGCCATTGATCGTGCATCTCTTTTAGCTAG 848
|||||.||.||.||..|.|||||.||.||.|||||.|||.|.||.||.||
RBAM_000020__ 799 AACACGAAGGAGTTTTTACAGGCGATAGACCGTGCTTCTTTATTGGCGAG 848
BSNT_00002___ 849 AGAGGGACGCAACAACGTTGTAAAACTGTCCGCAAAACCGGCTGAATCCA 898
|||.||.|||||||||||||||||.||.||.||.||||||||.||.||..
RBAM_000020__ 849 AGAAGGCCGCAACAACGTTGTAAAGCTTTCTGCCAAACCGGCGGATTCGC 898
BSNT_00002___ 899 TTGAAATTTCTTCCAATTCACCGGAAATCGGTAAAGTTGTGGAAGCAAT- 947
|.||.|||||.||.|||||.|||||||||||.|||||.||.||||| |
RBAM_000020__ 899 TGGAGATTTCATCAAATTCTCCGGAAATCGGGAAAGTGGTCGAAGC--TG 946
BSNT_00002___ 948 TGCT-GCGGATCAAATTGAAGGTGAGGAATTAAATATCTCTTTTAGTCCA 996
|||| ||.||.||.|||||.||.||||||||||||||.||.||.||||||
RBAM_000020__ 947 TGCTGGCTGACCAGATTGACGGCGAGGAATTAAATATTTCATTCAGTCCA 996
BSNT_00002___ 997 AAATATATGCTGGATGCACTAAAGGTGCTTGAAGGAGCAGAAATACGCGT 1046
|||||||||.||||.|||||.||.||.|||||||||||.||.||.||..|
RBAM_000020__ 997 AAATATATGATGGACGCACTGAAAGTACTTGAAGGAGCGGACATCCGTAT 1046
BSNT_00002___ 1047 AAGCTTTACAGGTGCAATGAGACC-TTTCTTAATTCGCACGCCGAATGAT 1095
.||||||||.||.||.|||||||| |||||| ||.||.||||||||||||
RBAM_000020__ 1047 CAGCTTTACGGGAGCGATGAGACCGTTTCTT-ATCCGTACGCCGAATGAT 1095
BSNT_00002___ 1096 GAAACGATTGTACAGCTTATCCTCCCTGTCAGAACCTATTAA 1137
|||||.||.||.|||||.|||||.||.||||||||.||||||
RBAM_000020__ 1096 GAAACCATCGTTCAGCTCATCCTTCCGGTCAGAACGTATTAA 1137
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.