Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06175 and BSU40250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:46
# Commandline: needle
# -asequence dna-align/BSNT_06175___yycR.1.22522.seq
# -bsequence dna-align/BSU40250___yycR.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06175___yycR-BSU40250___yycR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06175___yycR-BSU40250___yycR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06175___yycR
# 2: BSU40250___yycR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1227
# Identity: 1190/1227 (97.0%)
# Similarity: 1190/1227 (97.0%)
# Gaps: 0/1227 ( 0.0%)
# Score: 5802.0
#
#
#=======================================
BSNT_06175___ 1 ATGGGAGGAATGGCGTTGACAGGAAACAAAGCGGTTGTGTACAAAGGCAA 50
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU40250___yy 1 ATGGGAGGAATGGCGTTGACAGGAAACAAAGCGGTTGTGTACAAAGGCAA 50
BSNT_06175___ 51 AGGGACTGTAGCGGTGGAGGATATCGGTTATCCGGAGTTAATCTTGAGGG 100
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU40250___yy 51 AGGGACTGTAGCGGTGGAGGATATCGGTTATCCGGAGTTAATCTTGAGGG 100
BSNT_06175___ 101 ACGGGCCCGGCGTCCCGAAGGCGAATGTGAATCGAAAATGTGAGCATGGG 150
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU40250___yy 101 ACGGGCCCGGCGTCCCGAAGGCGAATGTGAATCGAAAATGTGAGCATGGG 150
BSNT_06175___ 151 GTTATTCTCAAAGTCATTACAACCAACATTTGCGGAAGCGACCAGCATAT 200
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU40250___yy 151 GTTATTCTCAAAGTCATTACAACCAACATTTGCGGAAGCGACCAGCATAT 200
BSNT_06175___ 201 GGTCAGAGGCCGCACAACGGCGCCTGAAGGCTTGGTGCTCGGGCATGAAA 250
||||||||||||||||||||||||.|||||||||||||||||||||||||
BSU40250___yy 201 GGTCAGAGGCCGCACAACGGCGCCAGAAGGCTTGGTGCTCGGGCATGAAA 250
BSNT_06175___ 251 TCACCGGAGAAGTCATTGAAACGGGGCGTGATGTCGAATTTATCAAAAAG 300
|.||.|||||||||||||||||||||||||||||.||||||||||||||.
BSU40250___yy 251 TTACGGGAGAAGTCATTGAAACGGGGCGTGATGTTGAATTTATCAAAAAA 300
BSNT_06175___ 301 GGCGATATCGTATCCGTTCCTTTCAATATTGCCTGCGGACGCTGTGTGAT 350
||.|||||||||||||||||||||||||||||||||||||||||||||||
BSU40250___yy 301 GGAGATATCGTATCCGTTCCTTTCAATATTGCCTGCGGACGCTGTGTGAT 350
BSNT_06175___ 351 GTGCAAAACGCAGAAAACGCATGTGTGCCTGAATGTCAATCCGGATCGGC 400
|||||||||||||||||||||||||||||||||||||||||||||.||||
BSU40250___yy 351 GTGCAAAACGCAGAAAACGCATGTGTGCCTGAATGTCAATCCGGACCGGC 400
BSNT_06175___ 401 CGGGATCTGCTTACGGCTACGTCGATATGGGCGGCTGGATCGGCGGCCAG 450
|||||||.||||||||||||||||||||||||||||||.|||||||||||
BSU40250___yy 401 CGGGATCGGCTTACGGCTACGTCGATATGGGCGGCTGGGTCGGCGGCCAG 450
BSNT_06175___ 451 TCTGAATACGTCATGGTGCCATACGCTGACTTTCAGCTTTTGGTATTCCC 500
||||||||.||||||||||||||||||||.||||||||||||||||||||
BSU40250___yy 451 TCTGAATATGTCATGGTGCCATACGCTGATTTTCAGCTTTTGGTATTCCC 500
BSNT_06175___ 501 TGATAAAGAACAGGCGTTAGAAAAGATTCTCGATTTGACCATGCTGTCCG 550
||||||||||||||||.|||||||||||||||||||||||||||||||||
BSU40250___yy 501 TGATAAAGAACAGGCGCTAGAAAAGATTCTCGATTTGACCATGCTGTCCG 550
BSNT_06175___ 551 ACATTTTCCCGACCGGCTTCCATGGAGCTTACACAGCGGGCGTGCAAACA 600
|||||||.|||||||||||||||||||||||.||||||||||||||||||
BSU40250___yy 551 ACATTTTTCCGACCGGCTTCCATGGAGCTTATACAGCGGGCGTGCAAACA 600
BSNT_06175___ 601 GGTTCAACCGTTTACATCGCGGGAGCGGGGCCTGTCGGCTTGGCAGCTGC 650
||||||||||||||.|||||.||||||||.||||||||||||||||||||
BSU40250___yy 601 GGTTCAACCGTTTATATCGCTGGAGCGGGTCCTGTCGGCTTGGCAGCTGC 650
BSNT_06175___ 651 ACACTCCGCTCAGCTCCTAGGCGCCTCCACCGTGATTGTCGGCGATCTGA 700
|||||||||||||||||||||||||||.||||||||||||||||||||||
BSU40250___yy 651 ACACTCCGCTCAGCTCCTAGGCGCCTCTACCGTGATTGTCGGCGATCTGA 700
BSNT_06175___ 701 ACGAAGACAGACTGGCACAGGCAAGAAGCTTCGGCTGTGAAACGGTCAAC 750
||||||||||.|||||||||||.|||||||||||||||||||||||||||
BSU40250___yy 701 ACGAAGACAGGCTGGCACAGGCCAGAAGCTTCGGCTGTGAAACGGTCAAC 750
BSNT_06175___ 751 GTGCAAAAACACGACCGCCTCGGCGAGCAAATTGAACAAATACTAGGTGA 800
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU40250___yy 751 GTGCAAAAACACGACCGCCTCGGCGAGCAAATTGAACAAATACTAGGTGA 800
BSNT_06175___ 801 ACCGACCGTTGATGCCGCAGTGGACTGTGTCGGCTTTGAAGCATCTGGCC 850
|||.|||||||||||.||||||||||||||||||||||||||||||||.|
BSU40250___yy 801 ACCAACCGTTGATGCTGCAGTGGACTGTGTCGGCTTTGAAGCATCTGGGC 850
BSNT_06175___ 851 ACGGCAATCAAGGGGAAGCGCCTGCCGCCGTGCTGAACTCGATCATGGAC 900
|||||||||||||.||||||||.|||||||||||||||||.|||||||||
BSU40250___yy 851 ACGGCAATCAAGGAGAAGCGCCAGCCGCCGTGCTGAACTCAATCATGGAC 900
BSNT_06175___ 901 GTCACCCAGGTCGGAGGCAGCCTCGGCATTCCAGGCTTATACGTGACCGA 950
|||||||||||||||||||||||.||||||||||||||||||||||||||
BSU40250___yy 901 GTCACCCAGGTCGGAGGCAGCCTTGGCATTCCAGGCTTATACGTGACCGA 950
BSNT_06175___ 951 AGATCCCGGCGCAAAGGATGCGGACGCTAAAACAGGCTCACTAAAAATCC 1000
|||||||||.|||||||||||||||||.||||||||||||.|||||||||
BSU40250___yy 951 AGATCCCGGTGCAAAGGATGCGGACGCCAAAACAGGCTCATTAAAAATCC 1000
BSNT_06175___ 1001 GATTCGGACTCGGCTGGGCCAAAGCCCACACCTTCGTCACCGGACAAACA 1050
|.|||||||||||||||||||||||||||||||||||||||||||||||.
BSU40250___yy 1001 GCTTCGGACTCGGCTGGGCCAAAGCCCACACCTTCGTCACCGGACAAACG 1050
BSNT_06175___ 1051 CCTGCCATGACATACAACCGCAATTTGATGAAAGCGATCCTGAGCGGTAG 1100
||.||||||||||||||||||||||||||||||||||||||||||||.||
BSU40250___yy 1051 CCCGCCATGACATACAACCGCAATTTGATGAAAGCGATCCTGAGCGGCAG 1100
BSNT_06175___ 1101 AGCGCAGATCGCAAAAGCCGTCAACGCCACCGTCATTTCTCTGGACGACG 1150
||||||||||||||||||||||||.||||||||.||||||||||||||||
BSU40250___yy 1101 AGCGCAGATCGCAAAAGCCGTCAATGCCACCGTTATTTCTCTGGACGACG 1150
BSNT_06175___ 1151 CGCCAAAAGGCTACAGCGACTTTGACAAAGGCGCAGCCAAAAAATTCGTC 1200
||||||||||||||||||||||.|||||||||||||||||||||||||||
BSU40250___yy 1151 CGCCAAAAGGCTACAGCGACTTCGACAAAGGCGCAGCCAAAAAATTCGTC 1200
BSNT_06175___ 1201 ATCGACCCGCATGGGACATTGAAGTAA 1227
|||||||||||||||||||||||||||
BSU40250___yy 1201 ATCGACCCGCATGGGACATTGAAGTAA 1227
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