Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06191 and BSU33790

See Amino acid alignment / Visit BSNT_06191 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:49
# Commandline: needle
#    -asequence dna-align/BSNT_06191.1.22522.seq
#    -bsequence dna-align/BSU33790___sdpR.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06191-BSU33790___sdpR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06191-BSU33790___sdpR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06191
# 2: BSU33790___sdpR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 303
# Identity:     162/303 (53.5%)
# Similarity:   162/303 (53.5%)
# Gaps:          96/303 (31.7%)
# Score: 524.0
# 
#
#=======================================

BSNT_06191         1 ------------------------------------------------TT      2
                                                                     ||
BSU33790___sd      1 ATGAATAATGTTTTCAAAGCTATATCAGATCCAACAAGGAGAAAAATTTT     50

BSNT_06191         3 GGATTTGTTAAAACAACAAGATTTAACAGCCGGGCAAATTGCTGACCAAT     52
                     |||||||||||||..|...|||.|.||.||.||..|.||||||||.||.|
BSU33790___sd     51 GGATTTGTTAAAAGGAGGGGATATGACTGCGGGAGATATTGCTGAGCATT    100

BSNT_06191        53 TTGATATGTCA--AAACCTAGTATTTCTCATCACTTAAATATTTTAAAGA    100
                     ||.|||  |||  |||||.||||||||.||.|||||.||||||||||||.
BSU33790___sd    101 TTAATA--TCAGCAAACCGAGTATTTCGCACCACTTGAATATTTTAAAGC    148

BSNT_06191       101 ACACTGATTTAGTACGAGACCA----AAAAAAGGGACAATTTATTATTTA    146
                     |..|.||..|..||.|.|||||    |||    ||||||||||||..|||
BSU33790___sd    149 AAGCGGAAGTCATAAGTGACCATCGCAAA----GGACAATTTATTTATTA    194

BSNT_06191       147 TTCTTTAAATACGACTGTACTTCAAGATCT-----TATTGGCTGGTTTTT    191
                     .|||.|||||||.||.||||||||||| ||     .|||||.||    .|
BSU33790___sd    195 CTCTCTAAATACAACAGTACTTCAAGA-CTCAATAAATTGGATG----CT    239

BSNT_06191       192 TTCCCTTACAGATACAGACCATGACAAGAAGGAAGGTGGAGAATGA----    237
                     |..|.|||.|.|||                  |||| |||.||.||    
BSU33790___sd    240 TAACTTTATAAATA------------------AAGG-GGATAACGATTTA    270

BSNT_06191       237 ---    237
                        
BSU33790___sd    271 TGA    273


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