Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04954 and BSU33239

See Amino acid alignment / Visit BSNT_04954 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:28
# Commandline: needle
#    -asequence dna-align/BSNT_04954.1.22522.seq
#    -bsequence dna-align/BSU33239___yvrJ.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04954-BSU33239___yvrJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04954-BSU33239___yvrJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04954
# 2: BSU33239___yvrJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 339
# Identity:     153/339 (45.1%)
# Similarity:   153/339 (45.1%)
# Gaps:         186/339 (54.9%)
# Score: 765.0
# 
#
#=======================================

BSNT_04954         0 --------------------------------------------------      0
                                                                       
BSU33239___yv      1 TTGACCGTAAAAGACTTTGATAGTCCATCAAACCGCCTCCCTACTAAATT     50

BSNT_04954         0 --------------------------------------------------      0
                                                                       
BSU33239___yv     51 AAATGAAGGAAAGCAAAAAAAAGTAAACTACTACTTTCCGCCTAGTGTCT    100

BSNT_04954         0 --------------------------------------------------      0
                                                                       
BSU33239___yv    101 TCCAAAATACTTTGCAGCAGTTTACGTTTTATCGGTTTTCCTCACTTACA    150

BSNT_04954         1 ------------------------------------ATGGATCAGGTTTT     14
                                                         ||||||||||||||
BSU33239___yv    151 TACATGACTGCAGAAAAAGAAGGGAGGTATTTTCCTATGGATCAGGTTTT    200

BSNT_04954        15 TATAGAGGAAGTCGTAAAACAGATCGGCAATTTGGGGTTTCCCGCGCTGA     64
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33239___yv    201 TATAGAGGAAGTCGTAAAACAGATCGGCAATTTGGGGTTTCCCGCGCTGA    250

BSNT_04954        65 TTGCAATGTATCTGCTGACCCGATTCGAAAAGAAGTTTGATCAACTAATA    114
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33239___yv    251 TTGCAATGTATCTGCTGACCCGATTCGAAAAGAAGTTTGATCAACTAATA    300

BSNT_04954       115 GAACTAATGACAGAACTGAAAGATCATGCAAAAAAATAA    153
                     |||||||||||||||||||||||||||||||||||||||
BSU33239___yv    301 GAACTAATGACAGAACTGAAAGATCATGCAAAAAAATAA    339


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