Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04408 and BSU30280

See Amino acid alignment / Visit BSNT_04408 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:06
# Commandline: needle
#    -asequence dna-align/BSNT_04408___amyD.1.22522.seq
#    -bsequence dna-align/BSU30280___amyD.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04408___amyD-BSU30280___amyD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04408___amyD-BSU30280___amyD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04408___amyD
# 2: BSU30280___amyD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 912
# Identity:     854/912 (93.6%)
# Similarity:   854/912 (93.6%)
# Gaps:          48/912 ( 5.3%)
# Score: 4196.5
# 
#
#=======================================

BSNT_04408___      1 ATGAGTGAGATCGCAAGGGACGTTCATGTGAAACAGGTTAAGCCAAAAAA     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30280___am      1 ATGAGTGAGATCGCAAGGGACGTTCATGTGAAACAGGTTAAGCCAAAAAA     50

BSNT_04408___     51 GCAGTCCTCACTTTGGTGGATGTACATTCCTGCTTTGCTCTCCGTTCTGG    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30280___am     51 GCAGTCCTCACTTTGGTGGATGTACATTCCTGCTTTGCTCTCCGTTCTGG    100

BSNT_04408___    101 TCTTTATGATTTATCCGTTTGTGAAAGGCACATTGATTACCTTTACAAAC    150
                     |||||||||||||.||||||||||||||||||||||||||||||||||||
BSU30280___am    101 TCTTTATGATTTACCCGTTTGTGAAAGGCACATTGATTACCTTTACAAAC    150

BSNT_04408___    151 TGGAACGGCTTTTCACAAGTCTACCAATGGGTTGGATTCGCGCAATATGA    200
                     ||||||||.|||||||||||||||||||||||||||||||||||||||||
BSU30280___am    151 TGGAACGGATTTTCACAAGTCTACCAATGGGTTGGATTCGCGCAATATGA    200

BSNT_04408___    201 AAGGCTGTTTTCTGATCCTGACACTTGGCATATCTTAAAAAACACGCTGC    250
                     |||||||||||||||||||||.||||||||||||||||||||||||||||
BSU30280___am    201 AAGGCTGTTTTCTGATCCTGATACTTGGCATATCTTAAAAAACACGCTGC    250

BSNT_04408___    251 TTTACGGGCTTGGCAGCACTTTTTTTCAAAATGTGGTCGGGCTTCTATAC    300
                     .||||||||||||||||||.||||||||||||||||||||||||||.|||
BSU30280___am    251 ATTACGGGCTTGGCAGCACCTTTTTTCAAAATGTGGTCGGGCTTCTGTAC    300

BSNT_04408___    301 GCTCTGCTCTTAAATCAAAGCATTAAAACGAAAGCGGTAACAAGAACAAT    350
                     |||||.||||||||||||||||||||||||||||||||||||||||||||
BSU30280___am    301 GCTCTCCTCTTAAATCAAAGCATTAAAACGAAAGCGGTAACAAGAACAAT    350

BSNT_04408___    351 TGTGTATTTGCCGGTGATGATCAGCCCGCTCATTATGGGCTACATTTGGT    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30280___am    351 TGTGTATTTGCCGGTGATGATCAGCCCGCTCATTATGGGCTACATTTGGT    400

BSNT_04408___    401 ACTTTTTCTTCTCCTATGACGGAGGCGCGCTCAATGATTTGCTCGGGGTC    450
                     ||||||||||||||||||||||||||||||||||.|||||||||||||||
BSU30280___am    401 ACTTTTTCTTCTCCTATGACGGAGGCGCGCTCAACGATTTGCTCGGGGTC    450

BSNT_04408___    451 TTCGGCATCAGCCCTATTAATGCGCTCGCCAGTCCCTC------------    488
                     ||||||||||||||||||||||||||||||||||||||            
BSU30280___am    451 TTCGGCATCAGCCCTATTAATGCGCTCGCCAGTCCCTCGCTCAATCCATG    500

BSNT_04408___    489 ------------------------------------GATCGCTATGGTTG    502
                                                         ||||||||||||||
BSU30280___am    501 GATCATTGTCATGATTAACACCTATCAATATGTCGGGATCGCTATGGTTG    550

BSNT_04408___    503 TCTACTTAGCCGGTCTGCAAAGCATTCCGAAAGACTACTATGAAGCGGCG    552
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30280___am    551 TCTACTTAGCCGGTCTGCAAAGCATTCCGAAAGACTACTATGAAGCGGCG    600

BSNT_04408___    553 CAAATGGATGGCGCGAAACAAGGCCAGCAGTTTTTTACCATCACGCTGCC    602
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30280___am    601 CAAATGGATGGCGCGAAACAAGGCCAGCAGTTTTTTACCATCACGCTGCC    650

BSNT_04408___    603 GCTGTTAATGCCCTCCATTACCATTAATATGGTCATCAACATTATCGGAG    652
                     ||||||||||||||||||||||||||||||.|||||||||||||||||||
BSU30280___am    651 GCTGTTAATGCCCTCCATTACCATTAATATAGTCATCAACATTATCGGAG    700

BSNT_04408___    653 GCTTAAAGCTGTTTGACGTCATCATTGCACTCACCGCTGGCGGCCCCGGA    702
                     |||||||||||||||||||||||||||||||||||||.||||||||||||
BSU30280___am    701 GCTTAAAGCTGTTTGACGTCATCATTGCACTCACCGCAGGCGGCCCCGGA    750

BSNT_04408___    703 AATGCGTCACAATCCATGTCCACGTTTATGTATGATTTGTATTTCAAACG    752
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30280___am    751 AATGCGTCACAATCCATGTCCACGTTTATGTATGATTTGTATTTCAAACG    800

BSNT_04408___    753 GCAGGATGCCGGCTATGCCGCAACGCAAGGCATATTTATGGCATTTGTCA    802
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30280___am    801 GCAGGATGCCGGCTATGCCGCAACGCAAGGCATATTTATGGCATTTGTCA    850

BSNT_04408___    803 TTTTGATCATCAGCTTTTGCGCGCTTGCGTACTTTAAAAGAAAGGAGACG    852
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30280___am    851 TTTTGATCATCAGCTTTTGCGCGCTTGCGTACTTTAAAAGAAAGGAGACG    900

BSNT_04408___    853 GAAATGTCATGA    864
                     ||||||||||||
BSU30280___am    901 GAAATGTCATGA    912


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