Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04114 and BSU28320

See Amino acid alignment / Visit BSNT_04114 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:30
# Commandline: needle
#    -asequence dna-align/BSNT_04114.1.22522.seq
#    -bsequence dna-align/BSU28320___ysnD.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04114-BSU28320___ysnD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04114-BSU28320___ysnD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04114
# 2: BSU28320___ysnD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 336
# Identity:     258/336 (76.8%)
# Similarity:   258/336 (76.8%)
# Gaps:          48/336 (14.3%)
# Score: 1132.5
# 
#
#=======================================

BSNT_04114         1 ATGAATAAATCATTAGCAGACATGCAAGGATTCCCTGCAGGCTTTCCAAG     50
                     ||||||||||||||.|||||||||||||||||.|||||.|||||||||||
BSU28320___ys      1 ATGAATAAATCATTTGCAGACATGCAAGGATTTCCTGCGGGCTTTCCAAG     50

BSNT_04114        51 CTTCCCGAGCTTTCCGCAGCAGTATTATCCTGCTGTCCCTCCCTTTTACC    100
                     ||||||.|.|||||||||||||||.|||||||||||||||||||||||||
BSU28320___ys     51 CTTCCCCAACTTTCCGCAGCAGTACTATCCTGCTGTCCCTCCCTTTTACC    100

BSNT_04114       101 AGCAAAGCCATCAGCCATTTGGAGGCTACGGATACGGACAGCCGTTCAGC    150
                     ||||||||||.||||||||||||||||||||||||||||||||||||||.
BSU28320___ys    101 AGCAAAGCCAGCAGCCATTTGGAGGCTACGGATACGGACAGCCGTTCAGT    150

BSNT_04114       151 CAGGCATATAGCCCGTTAACCACTCCCTCTGCTATGTACTCCTCTTATCC    200
                     ||||||||.||||||||||||||||||||||..|||||||||||.|..||
BSU28320___ys    151 CAGGCATACAGCCCGTTAACCACTCCCTCTGGAATGTACTCCTCATTCCC    200

BSNT_04114       201 ATACACTTCAGATTTTTTCGGGCAGCAATTTTCAGGCACTGGCTTCAGCG    250
                     ||||.||||||..||||.|||.||||||||||||||..|.|||||.||||
BSU28320___ys    201 ATACGCTTCAGGATTTTACGGACAGCAATTTTCAGGTGCAGGCTTTAGCG    250

BSNT_04114       251 GCCATAGCGGCGGGTTCAGT-----------------------ATTC---    274
                     |||||.|||||.|.||.|||                       ||||   
BSU28320___ys    251 GCCATGGCGGCAGCTTAAGTGCTCCAGCGATACATGCCGGCGGATTCAGC    300

BSNT_04114       275 ---------------CNCGGGGGTTTTAG-------    288
                                    | |||.||.|||||       
BSU28320___ys    301 GGGGCGCCAGGCGTACACGGAGGCTTTAGATATTAA    336


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