Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03888 and BSU26780

See Amino acid alignment / Visit BSNT_03888 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:59
# Commandline: needle
#    -asequence dna-align/BSNT_03888___yrdA.1.22522.seq
#    -bsequence dna-align/BSU26780___yrdA.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03888___yrdA-BSU26780___yrdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03888___yrdA-BSU26780___yrdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03888___yrdA
# 2: BSU26780___yrdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 504
# Identity:     498/504 (98.8%)
# Similarity:   498/504 (98.8%)
# Gaps:           0/504 ( 0.0%)
# Score: 2466.0
# 
#
#=======================================

BSNT_03888___      1 GTGTTTCAAACCTTAGACCATTTTTTGAAATCTTGGGAGTTCGAAGCAGA     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU26780___yr      1 GTGTTTCAAACCTTAGACCATTTTTTGAAATCTTGGGAGTTCGAAGCAGA     50

BSNT_03888___     51 TGCTACACAGAAACTATTAAATAATCTGACTGATGAATCACTTAAACAAG    100
                     |||||||||||||||||||||||.||||||||||||||||||||||||||
BSU26780___yr     51 TGCTACACAGAAACTATTAAATAGTCTGACTGATGAATCACTTAAACAAG    100

BSNT_03888___    101 AAATAACTTCACAAAATTGGACTCTAGGCCGTATTGCTTGGCATACTGTT    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU26780___yr    101 AAATAACTTCACAAAATTGGACTCTAGGCCGTATTGCTTGGCATACTGTT    150

BSNT_03888___    151 GCTGCCATTCGCATCATTACCTCAAACACAGACTTAACGTTCCATGCCCC    200
                     |||||||||.||||||||||||||||||||||||||||||||||.|||||
BSU26780___yr    151 GCTGCCATTGGCATCATTACCTCAAACACAGACTTAACGTTCCAAGCCCC    200

BSNT_03888___    201 AGCTGAAGATTATCCTGTTCCAACTTCGGCTCAGTTTATAGCTGACAGCT    250
                     |||||||||||||||||||||||||||.||||||||||||||||||||||
BSU26780___yr    201 AGCTGAAGATTATCCTGTTCCAACTTCTGCTCAGTTTATAGCTGACAGCT    250

BSNT_03888___    251 ATCATCAAGCCAGTAATGCATTTGTACAGGCATTAAAAACCCAATGGACT    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU26780___yr    251 ATCATCAAGCCAGTAATGCATTTGTACAGGCATTAAAAACCCAATGGACT    300

BSNT_03888___    301 GACCATACACTTCAAGAACGTATCAACTTTATCGGACAACAATTGCCTAA    350
                     ||||||||||||||||||||||||||||||||.|||||||||.|||||||
BSU26780___yr    301 GACCATACACTTCAAGAACGTATCAACTTTATTGGACAACAAATGCCTAA    350

BSNT_03888___    351 CGGTTCACTTTTGATGTTTTTAATTCAACATCAAAACCACCATCGGGGAC    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU26780___yr    351 CGGTTCACTTTTGATGTTTTTAATTCAACATCAAAACCACCATCGGGGAC    400

BSNT_03888___    401 AAATGACTGTTCTTATGAGACAAGCAGGTTTAACTGTTCCAGGTATTTAT    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU26780___yr    401 AAATGACTGTTCTTATGAGACAAGCAGGTTTAACTGTTCCAGGTATTTAT    450

BSNT_03888___    451 GGTCCAGCAAAAGAAGAATGGGCAAAATTTGGTTTGGAAGCCCCGAAAAT    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU26780___yr    451 GGTCCAGCAAAAGAAGAATGGGCAAAATTTGGTTTGGAAGCCCCGAAAAT    500

BSNT_03888___    501 GTAA    504
                     ||||
BSU26780___yr    501 GTAA    504


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.