Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03670 and BSU24610

See Amino acid alignment / Visit BSNT_03670 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:37
# Commandline: needle
#    -asequence dna-align/BSNT_03670___sinR.1.22522.seq
#    -bsequence dna-align/BSU24610___sinR.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03670___sinR-BSU24610___sinR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03670___sinR-BSU24610___sinR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03670___sinR
# 2: BSU24610___sinR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 342
# Identity:     336/342 (98.2%)
# Similarity:   336/342 (98.2%)
# Gaps:           6/342 ( 1.8%)
# Score: 1680.0
# 
#
#=======================================

BSNT_03670___      1 ATGACATTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTA     50
                           ||||||||||||||||||||||||||||||||||||||||||||
BSU24610___si      1 ------TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTA     44

BSNT_03670___     51 CTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGCGAAGTCTTATTTAA    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU24610___si     45 CTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGCGAAGTCTTATTTAA     94

BSNT_03670___    101 GCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAA    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU24610___si     95 GCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAA    144

BSNT_03670___    151 AAAGTCTCCGCTGTTCTGGACGTCTCGGTTCATACTTTGCTCGATGAGAA    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU24610___si    145 AAAGTCTCCGCTGTTCTGGACGTCTCGGTTCATACTTTGCTCGATGAGAA    194

BSNT_03670___    201 ACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAATTGG    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU24610___si    195 ACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAATTGG    244

BSNT_03670___    251 TTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTT    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU24610___si    245 TTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTT    294

BSNT_03670___    301 TTAGATTATCAAAAATGGAGAAAATCCCAAAAAGAGGAGTAG    342
                     ||||||||||||||||||||||||||||||||||||||||||
BSU24610___si    295 TTAGATTATCAAAAATGGAGAAAATCCCAAAAAGAGGAGTAG    336


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.