Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03089 and BSU21520

See Amino acid alignment / Visit BSNT_03089 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:32
# Commandline: needle
#    -asequence dna-align/BSNT_03089.1.22522.seq
#    -bsequence dna-align/BSU21520___yolC.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03089-BSU21520___yolC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03089-BSU21520___yolC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03089
# 2: BSU21520___yolC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 336
# Identity:     222/336 (66.1%)
# Similarity:   222/336 (66.1%)
# Gaps:          96/336 (28.6%)
# Score: 987.5
# 
#
#=======================================

BSNT_03089         1 ATGAAGAAGAGGTTAATTGAATTTTTGATTTTAGTTCCTGTTTTGATTAT     50
                     ||||||||||||.||||.|.|||||||.|.||||||||||.|||||||||
BSU21520___yo      1 ATGAAGAAGAGGCTAATCGGATTTTTGGTCTTAGTTCCTGCTTTGATTAT     50

BSNT_03089        51 GTCAGGTATAACTTTAACCGAAGCAAATAAAAAGTCCCCTTTGGAAGTAA    100
                     |||||||||.|||||||.||||||||||||||||||||||||||||||||
BSU21520___yo     51 GTCAGGTATTACTTTAATCGAAGCAAATAAAAAGTCCCCTTTGGAAGTAA    100

BSNT_03089       101 TCGGTAGTATTCGGGATGAATTTGGTTTATTTAGTGTGCAAATTGGTCAA    150
                     |.|.||.|||||||||||||||||||.||||.||||||||||||||||||
BSU21520___yo    101 TTGATAATATTCGGGATGAATTTGGTATATTCAGTGTGCAAATTGGTCAA    150

BSNT_03089       151 ACAGATCCGGCAATTACAATT-GCATGGATCATACCAAAAGT--------    191
                     ||||||||||||||||||||| ||||||||||.|||||||||        
BSU21520___yo    151 ACAGATCCGGCAATTACAATTGGCATGGATCAAACCAAAAGTGAAGCAAA    200

BSNT_03089       192 ----------------------------------GAAGCAAAGGAAAAAT    207
                                                       ||||||||||||||||
BSU21520___yo    201 GCTCCGTGAGTATTTAAAAGATAATCTGTCTAGAGAAGCAAAGGAAAAAT    250

BSNT_03089       208 ATAAAATTTATATATTCAAAGATGATATT-GTAA----------------    240
                     ||||.||.||||||||.|||||||||||| .|||                
BSU21520___yo    251 ATAAGATCTATATATTAAAAGATGATATTAATAAATTGGAGAAAGAACAT    300

BSNT_03089       240 ------------------------------------    240
                                                         
BSU21520___yo    301 CGAGAGTATTTGAAAGCAAATAACCCCAATAAGTAA    336


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