Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05060 and BSU20730

See Amino acid alignment / Visit BSNT_05060 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:37
# Commandline: needle
#    -asequence dna-align/BSNT_05060___yopX.1.22522.seq
#    -bsequence dna-align/BSU20730___yopX.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05060___yopX-BSU20730___yopX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05060___yopX-BSU20730___yopX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05060___yopX
# 2: BSU20730___yopX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 487
# Identity:     275/487 (56.5%)
# Similarity:   275/487 (56.5%)
# Gaps:         149/487 (30.6%)
# Score: 763.5
# 
#
#=======================================

BSNT_05060___      1 ATGAACACAGCATACAGAGTTTGGGACGGCGAGCATATGCATTATTGGGA     50
                     |||||||||||||||||||||||||||||||||||.||||||||||||||
BSU20730___yo      1 ATGAACACAGCATACAGAGTTTGGGACGGCGAGCAGATGCATTATTGGGA     50

BSNT_05060___     51 TGATGAAGGGATAAAGTTGTTAATTGAG-------------------GGA     81
                     |||||||||             .|||||                   ||.
BSU20730___yo     51 TGATGAAGG-------------TTTGAGCCTTATCATCAAAAGCAACGGC     87

BSNT_05060___     82 GATAAGTGGACTTTATATCTTGAA--GTT--GCCACAGGTCATTTGCTT-    126
                     |||   ||||||       |||||  |||  ..|||||.|..||||.|| 
BSU20730___yo     88 GAT---TGGACT-------TTGAAACGTTTATACACAGATGTTTTGGTTC    127

BSNT_05060___    127 --GATGT------CGCGGATAGTGAAGATGGGAAGTCCGTTCTCATGTGG    168
                       |.|||      |.||.|||         |.||..|.|.||||||||||
BSU20730___yo    128 CGGTTGTAGACAGCACGAATA---------GAAACGCGGCTCTCATGTGG    168

BSNT_05060___    169 GGCACAGGGTCGAAGGATAAG----AAAGGTA---AGGATA----TATAT    207
                     ||..||      |||| ||||    |||..||   |.||||    ||||.
BSU20730___yo    169 GGAGCA------AAGG-TAAGAGGCAAATTTATTTATGATAGGTCTATAG    211

BSNT_05060___    208 CAAAAGGATATTACTGAGGAATCCTATATA--CATCCTATGTCTAAGGAG    255
                     .||||    ||.|| |||..||..||.|.|  ||||..||||.|..|.||
BSU20730___yo    212 TAAAA----ATAAC-GAGTGATGATAAAGAATCATCAGATGTTTGCGAAG    256

BSNT_05060___    256 --AA--TATCATTGAT--CGTTATGTAA-TAGAGCGA--AAAAA------    290
                       ||  |.|||  |||  ||||.|..|| ||||...|  |||||      
BSU20730___yo    257 TTAAGTTTTCA--GATGGCGTTTTCCAAGTAGATGTATCAAAAATTTCCG    304

BSNT_05060___    291 CGGATT-TGACAGAATTGA------ACACGTTAGTGGAAAAGAAGGTTTT    333
                     |.|||| ||||    .|||      .|..||..||||||           
BSU20730___yo    305 CTGATTATGAC----GTGACTGCCGTCGGGTGGGTGGAA-----------    339

BSNT_05060___    334 TACAGACACTTATGGTTACGAACTGATGAAGTTGAAGTCATCGGCGATGT    383
                               ||||     .||||      .|||||||.|||||.||.||
BSU20730___yo    340 ----------TATG-----CAACT------ATTGAAGTAATCGGAGACGT    368

BSNT_05060___    384 ATTTCAAAATCCTGATTTATTGGAGGGCGCGGAGTGA    420
                     .|.||||||||||||.|||||||||||.|.|.|.|||
BSU20730___yo    369 TTATCAAAATCCTGAGTTATTGGAGGGTGTGAAATGA    405


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