Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02942 and BSU17770

See Amino acid alignment / Visit BSNT_02942 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:15
# Commandline: needle
#    -asequence dna-align/BSNT_02942.1.22522.seq
#    -bsequence dna-align/BSU17770___yndF.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02942-BSU17770___yndF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02942-BSU17770___yndF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02942
# 2: BSU17770___yndF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1215
# Identity:     552/1215 (45.4%)
# Similarity:   552/1215 (45.4%)
# Gaps:         663/1215 (54.6%)
# Score: 2760.0
# 
#
#=======================================

BSNT_02942         0 --------------------------------------------------      0
                                                                       
BSU17770___yn      1 GTGAAAAGTAAACTAAAACGTCAATTGCCTGCTATGGTCATAGTATGTCT     50

BSNT_02942         0 --------------------------------------------------      0
                                                                       
BSU17770___yn     51 GCTGATGATTTGCGTAACAGGATGCTGGAGCAGTCGGGAAATAGAAGATC    100

BSNT_02942         0 --------------------------------------------------      0
                                                                       
BSU17770___yn    101 TGGGTCTCACATTCGCTATCGCAATTGATAAAGGAAAAGAAACGAACACT    150

BSNT_02942         0 --------------------------------------------------      0
                                                                       
BSU17770___yn    151 GAAAAAGAGTTAAAAGAAGAGGGCGGGAGCTATCCGAAAAAAGACAACAT    200

BSNT_02942         0 --------------------------------------------------      0
                                                                       
BSU17770___yn    201 TACGCTGACCTATCAATTTGTTAATGAAAAAGCGGCAGGCGCGGGCACAA    250

BSNT_02942         0 --------------------------------------------------      0
                                                                       
BSU17770___yn    251 GCGGGGGAGGCGGTAGCGGACAAGGAGCGCAAAAAGCGTACATTAATATA    300

BSNT_02942         0 --------------------------------------------------      0
                                                                       
BSU17770___yn    301 AGTGAAACAGGGGATTCATTACAGCAGATCGGAAGTGAGGTTGCATTAAG    350

BSNT_02942         0 --------------------------------------------------      0
                                                                       
BSU17770___yn    351 ACGGGACCGAGAAGTGTTTAGCCCGCATTTAAAAGTTGTTGTCATGAGTG    400

BSNT_02942         0 --------------------------------------------------      0
                                                                       
BSU17770___yn    401 AAGATGTGCTGCACACATTTCCTATCGACGAAATGCTGGATCAATTTTTT    450

BSNT_02942         0 --------------------------------------------------      0
                                                                       
BSU17770___yn    451 CGTGATAATGAAATCAGGCTGAGCTGTCTTGTTTTATCTGCTAAAGGGGA    500

BSNT_02942         0 --------------------------------------------------      0
                                                                       
BSU17770___yn    501 AGCAAGAGACGCTCTCCAGCTGAAAGAGAACGGAGAAATTCCGGCATTTC    550

BSNT_02942         0 --------------------------------------------------      0
                                                                       
BSU17770___yn    551 GGCTGATTGGATTAGGTGAAAATGAACATAAAGTTTCCAGAATTCTTCCC    600

BSNT_02942         0 --------------------------------------------------      0
                                                                       
BSU17770___yn    601 CCTATGACACTCGCGAAACTAATTGGAAAACTGCATTCTGGCAGCAGCTT    650

BSNT_02942         1 -------------GTGGTTGCGGCGAATGGAGCGGTCAAGTATTCCGGAG     37
                                  |||||||||||||||||||||||||||||||||||||
BSU17770___yn    651 TTTACTGCAAAATGTGGTTGCGGCGAATGGAGCGGTCAAGTATTCCGGAG    700

BSNT_02942        38 CAGCTGTAATCAACGGAAAATCGAAAAAAATGATAGGCACCTTAAATGAA     87
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17770___yn    701 CAGCTGTAATCAACGGAAAATCGAAAAAAATGATAGGCACCTTAAATGAA    750

BSNT_02942        88 TATGAAACTGAGGGGATTACATGGATTAGAGGAGAAGGGAAAGGCGGAGT    137
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17770___yn    751 TATGAAACTGAGGGGATTACATGGATTAGAGGAGAAGGGAAAGGCGGAGT    800

BSNT_02942       138 TGTCAAAAGTCATGATAAAAAGAGCCAACAGACGTTAGCGTACGATATCA    187
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17770___yn    801 TGTCAAAAGTCATGATAAAAAGAGCCAACAGACGTTAGCGTACGATATCA    850

BSNT_02942       188 ATAAAATCAAAAGCAGAATTCAGCCAATCGTAAAAGGGAAAGATATTTCA    237
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17770___yn    851 ATAAAATCAAAAGCAGAATTCAGCCAATCGTAAAAGGGAAAGATATTTCA    900

BSNT_02942       238 TTCCATGTCGATATTGAATCAGAAGGCGATTTGGTTGAAAACTGGAACAC    287
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17770___yn    901 TTCCATGTCGATATTGAATCAGAAGGCGATTTGGTTGAAAACTGGAACAC    950

BSNT_02942       288 AAAAGAGGCGTTGGACACCCAGTTTATAGATCGTCTCGAAACGACTATTG    337
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17770___yn    951 AAAAGAGGCGTTGGACACCCAGTTTATAGATCGTCTCGAAACGACTATTG   1000

BSNT_02942       338 AAAACGAGGTAAAGAAAATAGTTGGTCAGGTATTAAAAAAAATTCAGCAT    387
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17770___yn   1001 AAAACGAGGTAAAGAAAATAGTTGGTCAGGTATTAAAAAAAATTCAGCAT   1050

BSNT_02942       388 GATTATAAAGCAGATGTTGCGGGTTTTGATGAATCTTTTAGACTTACATA    437
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17770___yn   1051 GATTATAAAGCAGATGTTGCGGGTTTTGATGAATCTTTTAGACTTACATA   1100

BSNT_02942       438 TCCTCACTTATGGAAAAGGGTGAAAAATAACTGGGATGACACCTTCAGTA    487
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17770___yn   1101 TCCTCACTTATGGAAAAGGGTGAAAAATAACTGGGATGACACCTTCAGTA   1150

BSNT_02942       488 AAGCCGACATCACATACAGTGTGAACGTCACAATTACTCATTTCGGCACG    537
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17770___yn   1151 AAGCCGACATCACATACAGTGTGAACGTCACAATTACTCATTTCGGCACG   1200

BSNT_02942       538 GTTAAAACTCAGTAA    552
                     |||||||||||||||
BSU17770___yn   1201 GTTAAAACTCAGTAA   1215


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