Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02903 and BSU17590
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:13
# Commandline: needle
# -asequence dna-align/BSNT_02903___xylR.1.22522.seq
# -bsequence dna-align/BSU17590___xylR.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02903___xylR-BSU17590___xylR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02903___xylR-BSU17590___xylR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02903___xylR
# 2: BSU17590___xylR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1155
# Identity: 1030/1155 (89.2%)
# Similarity: 1030/1155 (89.2%)
# Gaps: 102/1155 ( 8.8%)
# Score: 5058.0
#
#
#=======================================
BSNT_02903___ 1 GTGGATATCGCTGATCAAACCTTTGTCAAAAAAGTAAATCAAAAGTTATT 50
BSU17590___xy 0 -------------------------------------------------- 0
BSNT_02903___ 51 ATTAAAAGAAATCCTTAAAAATTCACCTATTTCAAGAGCAAAATTATCTG 100
BSU17590___xy 0 -------------------------------------------------- 0
BSNT_02903___ 101 AAATGACTGGATTAAATAAATCAACTGTTTCATCACAGGTAAACACGTTA 150
||||||||||||||||||||||||||.|||||||||||||||||||||
BSU17590___xy 1 --ATGACTGGATTAAATAAATCAACTGTCTCATCACAGGTAAACACGTTA 48
BSNT_02903___ 151 ATGAAAGAAAATCTGGTATTTGAAATAGGTCAAGGAAAATCAAGTGGCGG 200
||||||||||.|.|||||||||||||||||||||||.|||||||||||||
BSU17590___xy 49 ATGAAAGAAAGTATGGTATTTGAAATAGGTCAAGGACAATCAAGTGGCGG 98
BSNT_02903___ 201 AAGAAGACCTGTCATGCTTGTTTTTAATAAAAAGGCAGGATACTCCGTAG 250
||||||||||||||||||||||||||||||||||||||||||||||||.|
BSU17590___xy 99 AAGAAGACCTGTCATGCTTGTTTTTAATAAAAAGGCAGGATACTCCGTTG 148
BSNT_02903___ 251 GAATAGATGTTGGTGTGGATTATATCAATGGCATTTTAACAGACCTTGAA 300
|||||||||||||||||||||||||.||||||||||||||||||||||||
BSU17590___xy 149 GAATAGATGTTGGTGTGGATTATATTAATGGCATTTTAACAGACCTTGAA 198
BSNT_02903___ 301 GGAACGATCGTTCTTGATCAATACTGCCATTTGGAATCCAATTCTCCAGA 350
|||||.||||||||||||||||||.|||||||||||||||||||||||||
BSU17590___xy 199 GGAACAATCGTTCTTGATCAATACCGCCATTTGGAATCCAATTCTCCAGA 248
BSNT_02903___ 351 AATAACGAAAGACATTTTGATTGATATGATTCATCACTTTATTACGCATA 400
||||||||||||||||||||||||||||||||||||||||||||||||.|
BSU17590___xy 249 AATAACGAAAGACATTTTGATTGATATGATTCATCACTTTATTACGCAAA 298
BSNT_02903___ 401 TGCCCCAATCTCCGTACGGGCTTATTGGTATAGGTATTTGCGTGCCTGGA 450
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17590___xy 299 TGCCCCAATCTCCGTACGGGCTTATTGGTATAGGTATTTGCGTGCCTGGA 348
BSNT_02903___ 451 CTCATTGATAAAGATCAAAAAATTGTTTTCACTCCGAACTCCAACTGGAG 500
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17590___xy 349 CTCATTGATAAAGATCAAAAAATTGTTTTCACTCCGAACTCCAACTGGAG 398
BSNT_02903___ 501 AGATATTGACTTAAAATCTTCGATACAAGAGAAGTACAATGTGCCTGTTT 550
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17590___xy 399 AGATATTGACTTAAAATCTTCGATACAAGAGAAGTACAATGTGCCTGTTT 448
BSNT_02903___ 551 TTATTGAAAATGAGGCAAATGCTGGCGCATATGGAGAGAAAGTATTTGGA 600
|||||||||||||||||||||||||||||||||||||.||||||||||||
BSU17590___xy 449 TTATTGAAAATGAGGCAAATGCTGGCGCATATGGAGAAAAAGTATTTGGA 498
BSNT_02903___ 601 GCTGCAAAAAATCACGATAACATTATTTACGTAAGTATCAGCACAGGGAT 650
|||||||||||||||||||||||||||||||||||||||||||||||.||
BSU17590___xy 499 GCTGCAAAAAATCACGATAACATTATTTACGTAAGTATCAGCACAGGAAT 548
BSNT_02903___ 651 AGGGATCGGTGTTATTATCAACAATCATTTATATAGAGGAGTAAGCGGCT 700
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17590___xy 549 AGGGATCGGTGTTATTATCAACAATCATTTATATAGAGGAGTAAGCGGCT 598
BSNT_02903___ 701 TCTCTGGAGAAATGGGACATATGACAATAGACTTTAATGGTCCTAAATGC 750
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17590___xy 599 TCTCTGGAGAAATGGGACATATGACAATAGACTTTAATGGTCCTAAATGC 648
BSNT_02903___ 751 AGTTGCGGAAACCGAGGCTGCTGGGAATTGTATGCTTCAGAGAAGGCTTT 800
|||||||||||||||||.||||||||||||||||||||||||||||||||
BSU17590___xy 649 AGTTGCGGAAACCGAGGATGCTGGGAATTGTATGCTTCAGAGAAGGCTTT 698
BSNT_02903___ 801 ATTAACATCTCTTCAGACTAAAGCGAAAAAACTGTCCTATCAAGATATCA 850
|||||.||||||||||||.||||.||||||||||||||||||||||||||
BSU17590___xy 699 ATTAAAATCTCTTCAGACCAAAGAGAAAAAACTGTCCTATCAAGATATCA 748
BSNT_02903___ 851 TAGACCTCGCCCATCTGAATGATATCGGAACCTTAAACGCATTACAGAAT 900
||.||||||||||||||||||||||||||||||||||.||||||||.|||
BSU17590___xy 749 TAAACCTCGCCCATCTGAATGATATCGGAACCTTAAATGCATTACAAAAT 798
BSNT_02903___ 901 TTTGGATTCTATTTAGGAATAGGCCTTACCAATATTTTGAATACTTTCAA 950
||||||||||||||||||||||||||||||||||||.|.|||||||||||
BSU17590___xy 799 TTTGGATTCTATTTAGGAATAGGCCTTACCAATATTCTAAATACTTTCAA 848
BSNT_02903___ 951 CCCACAGGCCGTAATTTTAAGAAATAGCATAATTGAATCGCATCCTATGG 1000
||||||.|||||||||||||||||||||||||||||||||||||||||||
BSU17590___xy 849 CCCACAAGCCGTAATTTTAAGAAATAGCATAATTGAATCGCATCCTATGG 898
BSNT_02903___ 1001 TTTTAAATTCAATGAGAAGTGAAGTGTCGTCAAGGGTTTATTCCCAATTA 1050
|||||||||||||||||||||||||.||.|||||||||||||||||||||
BSU17590___xy 899 TTTTAAATTCAATGAGAAGTGAAGTATCATCAAGGGTTTATTCCCAATTA 948
BSNT_02903___ 1051 GGCAATAGCTATGAATTATTGCCATCTTCCTTAGGACAGAATGCACCGGC 1100
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17590___xy 949 GGCAATAGCTATGAATTATTGCCATCTTCCTTAGGACAGAATGCACCGGC 998
BSNT_02903___ 1101 ATTAGGAATGTCCTCCATTGTGATTGATCATTTTCTGGACATGATTACAA 1150
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17590___xy 999 ATTAGGAATGTCCTCCATTGTGATTGATCATTTTCTGGACATGATTACAA 1048
BSNT_02903___ 1151 TGTAA 1155
|||||
BSU17590___xy 1049 TGTAA 1053
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