Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02876 and BSU17480
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:11
# Commandline: needle
# -asequence dna-align/BSNT_02876.1.22522.seq
# -bsequence dna-align/BSU17480___ynzF.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02876-BSU17480___ynzF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02876-BSU17480___ynzF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02876
# 2: BSU17480___ynzF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 530
# Identity: 259/530 (48.9%)
# Similarity: 259/530 (48.9%)
# Gaps: 223/530 (42.1%)
# Score: 638.5
#
#
#=======================================
BSNT_02876 1 GTGTGGAAAGCTTTAAGTCAATTACTCAAGAAACAGAAAAATCAAAGTCC 50
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU17480___yn 1 GTGTGGAAAGCTTTAAGTCAATTACTCAAGAAACAGAAAAATCAAAGTCC 50
BSNT_02876 51 ACTCGATGAGGGTTATATACAGATTCCAGAAAAGGATATAAATCAAGAAT 100
|..||||||.|.||||||||||||||||||| ..||||.
BSU17480___yn 51 AAGCGATGAAGATTATATACAGATTCCAGAA------------TTAGAAG 88
BSNT_02876 101 TAAAGCAAGTGATATTTG------------AGT-----TGGAGAGCCTGG 133
||| |||| |||| ||| |..||| |||||
BSU17480___yn 89 TAA---AAGT----TTTGGGGATGCTTCACAGTATCAATATAGA-CCTGG 130
BSNT_02876 134 GGGAAGTAGTATCGAAAAAGCTGCAGAATAAGTATGCAGGTGTTTTTGAA 183
...|.|||.||.|..|| |||||| ||||.| .|||.||||.|
BSU17480___yn 131 TTAATGTAATAGCCCAA-----GCAGAA-AAGTCT-AAGGAGTTTAT--- 170
BSNT_02876 184 GCTCAGGATAAACCAAATCTCA-GCATCAAAGTTTGTAGAGACATAGATG 232
|||| ||||||..| ||||| ||
BSU17480___yn 171 ----AGGA-----CAAATCGAAGGCATC--------------------TG 191
BSNT_02876 233 GAGATGTGCTAAATGATTTTACAGCTGAGAGATGTTTTGAAAAAGAATAC 282
| .|||.||.||
BSU17480___yn 192 G-------------CATTCTATAG-------------------------- 202
BSNT_02876 283 CGTTCACAAATAGCAATTAATTACTATCAACCT---GCAATAGTCTGTGA 329
||||| ||||| ||| .||| || .|||..||.||.||
BSU17480___yn 203 ------CAAAT--CAATT--TTA--TTCA--CTCGCCCAAGGGTTTGAGA 238
BSNT_02876 330 TGATGAAGA-ATTAGACTGTTTCACAAT-GGATTTGTGGTATTACTACGG 377
||||.|| || |||| .|.||| ||.|||
BSU17480___yn 239 --ATGAGGATAT------------CAATAAGCTTT---------CTGCGG 265
BSNT_02876 378 ---TGGAT-ATAAAGGG--------ACGGGTTGTGGAA-CTTTATTCGAT 414
|.||| || | || ||| |||| ||.| |.|
BSU17480___yn 266 ATCTTGATCAT-----GCTGCCGCCAC---TTG-GGAAGCTGT-TGC--- 302
BSNT_02876 415 TTAAATAATAATGACTTAGAAAAAGAAATTGAAGAGGCGCTA--ATATTT 462
|||||| ||.||||||..||| || |.|||.
BSU17480___yn 303 -----TAATAA------AGCAAAAGAGTTTG---------TAACAAATTC 332
BSNT_02876 463 TTACTCAATGACAAACAATTCGAGAAATAA 492
.||| |||.|..||
BSU17480___yn 333 ATAC-CAAGGGTAA---------------- 345
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