Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01967 and BSU11780
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:19:21
# Commandline: needle
# -asequence dna-align/BSNT_01967___cotV.1.22522.seq
# -bsequence dna-align/BSU11780___cotV.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01967___cotV-BSU11780___cotV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01967___cotV-BSU11780___cotV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01967___cotV
# 2: BSU11780___cotV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 446
# Identity: 233/446 (52.2%)
# Similarity: 233/446 (52.2%)
# Gaps: 118/446 (26.5%)
# Score: 545.5
#
#
#=======================================
BSNT_01967___ 1 ATGTCTGTCCAAGAAAATGTTGACACACTCTACTCAAAAATGTTTAAAGA 50
|||||..|..|||||||.||.||..|.||..||.|...|||.|||.|..|
BSU11780___co 1 ATGTCATTTGAAGAAAAAGTCGAATCCCTGCACCCTGCAATATTTGAGCA 50
BSNT_01967___ 51 ACTGGCTGAAGAACATGATAATT--------ATATAGAAATTATTGATTC 92
|.| |.||.|..|||| |.||.|||.|.|||||||.
BSU11780___co 51 ATT--------ATCAAGCGAATTCGAACAGCAGATCGAAGTGATTGATTG 92
BSNT_01967___ 93 TGAAAAGATTACGATTCATAAATCAGACACCACATTTGCACTTTCATTGC 142
.|||||.||.||.|||.|.|..|||.|.|..|||..|||.|||||..|.|
BSU11780___co 93 CGAAAATATCACAATTGACACGTCACATATAACAGCTGCCCTTTCTATAC 142
BSNT_01967___ 143 AATCAGCAGTTTCAGCTTTAATCACTGTTACAACC--------------- 177
| |||.|| |||.||||||
BSU11780___co 143 A------------AGCCTT------TGTGACAACCATGATTATCGTGGCG 174
BSNT_01967___ 178 ---CAGCTTCTTATCAGCGA-TAGCGATATAGCAGACATTGTTGCGAGTG 223
|||||..|.|||..||| .|| |||.|.||.|||...||.||.||||
BSU11780___co 175 ACTCAGCTCGTCATCGCCGACGAG-GATTTGGCTGACGCAGTGGCAAGTG 223
BSNT_01967___ 224 A---TCTGATAGCACGCTCTACAGCACATAGCCGAAAGAAAGTAAAA--- 267
| |||.|| .|||.|.|||.| ||.||..||| ||||
BSU11780___co 224 AAATTCTTAT-----TCTCGATAGCTC----CCAAATCAAA--AAAAGAA 262
BSNT_01967___ 268 -----ATCAAAATTATAAACTGCTATAATATCACAATCACTTTATCAGC- 311
||.||||||||.|||.||...||.||||.|||.|||||.||.||
BSU11780___co 263 CCATCATTAAAATTATCAACAGCCGCAACATCAAAATTACTTTGTCTGCC 312
BSNT_01967___ 312 -------------------TACAGACATCATGGCATCCGTTCAGCTCTTA 342
||| |.|||.|| .|||||.|.|||
BSU11780___co 313 GACGAGATAATAACCTTTGTAC--AAATCTTG------CTTCAGGTGTTA 354
BSNT_01967___ 343 ACCCAAACATTAATCGCTCTTA-TAACAGAAGCTGACATTCTGTAG 387
|.| |.||| ||||| | |||..||||.|.||.||.
BSU11780___co 355 AAC--AGCAT-------TCTTAGT----GAACTTGACGTCCTTTAA 387
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