Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06189 and BSU11055
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:48
# Commandline: needle
# -asequence dna-align/BSNT_06189.1.22522.seq
# -bsequence dna-align/BSU11055___yitO.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06189-BSU11055___yitO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06189-BSU11055___yitO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06189
# 2: BSU11055___yitO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1057
# Identity: 604/1057 (57.1%)
# Similarity: 604/1057 (57.1%)
# Gaps: 230/1057 (21.8%)
# Score: 1392.0
#
#
#=======================================
BSNT_06189 1 ATGTTCGAAACGTTAAACATTAAAA------TTTATAAG-TGGG-CAAAT 42
|||.|||| ||||| ||||| .|.|..|| |||| |.||.
BSU11055___yi 1 ATGCTCGA------AAACA-TAAAACAGACCATCACCAGATGGGACGAAA 43
BSNT_06189 43 GATAACGTACCTTGGACCAATGTCTATGGTTTGGCAAGAAGTATTATGGC 92
|| ||| ||.|||||.|||||.|||||..|.||..||||.||.||.||
BSU11055___yi 44 GA-AAC---CCGTGGACAAATGTATATGGCCTCGCGCGAAGCATCATTGC 89
BSNT_06189 93 TTTATCTACAGCTT--TAACACTTGCT-TTAAATGATTCTAGCAT-TTTC 138
..|||| ||||.| |.||.| |||| .|.|||.|..|.|||.| .||.
BSU11055___yi 90 GCTATC--CAGCCTGCTGACGC-TGCTCATCAATCACCCGAGCCTCATTA 136
BSNT_06189 139 TTTAGACCGGGTGCAGGACAAGAAACACCGTA------TTGTAATGGAAC 182
|..||.|.|...||.|||..||.|.| || |||||| ||.
BSU11055___yi 137 TGAAGCCAGCCAGCGGGATCAGCAGC----TATCCAGCTTGTAA---AAT 179
BSNT_06189 183 ATAT---AGCATTTTTTGTACAGTGCCT-------AATAACCATATAT-A 221
..|| ||..|.|||||| || |||||| ||||| |
BSU11055___yi 180 GAATCTCAGTCTCTTTTGT-------CTCGGCGAAAATAAC--TATATGA 220
BSNT_06189 222 CCTTAA----TTTAATACGATGGATTTG---TGTCATCTTATTACTGGTT 264
..|||| |||.| |||||.|.|| ||.|| |.|||||.
BSU11055___yi 221 TGTTAAATCTTTTCA---GATGGGTCTGCATTGCCA------TTCTGGTG 261
BSNT_06189 265 GTTG-TGTCA--GGCTGGAGGCCCAGATTGACTGGAATTATACATTGGTG 311
.||| ||||| ||||||.|.||||||.|.||.||..||.|.|||||||
BSU11055___yi 262 CTTGTTGTCATTGGCTGGCGCCCCAGAATCACCGGGGTTCTGCATTGGT- 310
BSNT_06189 312 GATATCTTATAGTTTACA------AGT-ATCCGCT-AT-GACTATTGATG 352
||.|| || ||||| ||| || |||| || |.| ||.||.|
BSU11055___yi 311 -ATGTC----AG-TTACAGCCTGCAGTCAT-CGCTGATCGTC-ATCGACG 352
BSNT_06189 353 GGGGAGAGCAAGTGAG-TGCAGTTTTTACGTTACTACTCCTGCCTATAAC 401
|.||.|||| ||..|| .|||||..|.||.||..||.|.||.||.||.||
BSU11055___yi 353 GAGGCGAGC-AGGCAGCAGCAGTCATGACCTTTTTATTGCTTCCCATCAC 401
BSNT_06189 402 TTTGACCGATTCAAGAAAATGGCATTGGGAAAGTATAAAGACTGGTACAG 451
..||||||||.|.||||||||||||||| |||| ..||||...||.||
BSU11055___yi 402 GCTGACCGATCCGAGAAAATGGCATTGG---AGTA-CGAGACCTATAGAG 447
BSNT_06189 452 ATCTAATCAACA---AGAAAGAT------TTATATTTTCGCGTCATAGCA 492
..|.||..|||| .||||.|| ||.|||||
BSU11055___yi 448 GGCAAAAGAACACTTGGAAAAATAACAGCTTTTATTT------------- 484
BSNT_06189 493 CTTACAACTTTTGTATTTATTAGAATCCAAATTGCAATTTTATATTTTAA 542
|||| ||||| |.||.|||||||||.|.||..|..|.||||||.|
BSU11055___yi 485 CTTA----TTTTG---TGATCAGAATCCAAGTGGCGGTGCTTTATTTTCA 527
BSNT_06189 543 TTCAGCTAC---GGCAAAATTAGCTGATCAAGATTGGTTAAATGGAACGG 589
.| |||| .||.||..||.||.|.||.||.|||.|..|.|||||||
BSU11055___yi 528 CT---CTACCGTCGCTAAGCTATCTCAGCAGGAATGGGTGGACGGAACGG 574
BSNT_06189 590 CTGTTTATTATTATGCTC----AAGATCCAATGTTAGGTTTTCCGCCTTT 635
|.||.|||||||..||.| ||.|.||| ||.|.||...||.||||
BSU11055___yi 575 CCGTCTATTATTTCGCCCAGGAAAAAACCA---TTGGCTTCAACGGCTTT 621
BSNT_06189 636 ATTACATACCTTATTTAATGA--CTTTTTGTCATCA---CCTTTAGTTGT 680
||.||..| .||||.|| |...|||| |.|| ||.||.||.||
BSU11055___yi 622 -TTTCAGGC----GTTAACGAAGCCAATTGT-AACAAGTCCGTTCGTGGT 665
BSNT_06189 681 AATTCCAACTTGGGGAACTTTAATTATTC-AATTGTTATTATTTGCATTT 729
.|||||.||.|||||.||..|..|..||| |||||| |||.|
BSU11055___yi 666 GATTCCGACATGGGGGACGCTGCTGGTTCAAATTGT---------CATCT 706
BSNT_06189 730 T--------TATTTTCACCTA--AATCATATCGAAAATATATGTTTATTA 769
| |.|||.|.||.| ||.| ||.|.|.||..||.||.||.|
BSU11055___yi 707 TCGCGGCACTGTTTGCGCCGAAGAAGC--ATTGGAGATTGATTTTGATCA 754
BSNT_06189 770 TTGCAATACTTATGCATGAAATTTTTGCAGTAATGTTTGGTCTTATAAGT 819
|.||..|..||||||||||.|||||||||||.|||.|.||.||.||.|||
BSU11055___yi 755 TCGCTGTTTTTATGCATGAGATTTTTGCAGTCATGCTGGGCCTCATCAGT 804
BSNT_06189 820 TTTTCAATGATTATGCTAGGTATTTTAATTCTCTATTTAAGGCCCTTAGA 869
|||||.||.||.|||...||.|||||.||..|.|||.|.|..||..|.||
BSU11055___yi 805 TTTTCGATTATCATGGCCGGCATTTTGATATTGTATCTCACTCCTATCGA 854
BSNT_06189 870 ------AAAACAATTT-CAT-TTTTCATTAGGAAAACGGTTTTACATTAG 911
.|..|||||| ||| |.||| |.|.||.|||.|..|
BSU11055___yi 855 TTCCACGATTCAATTTACATATATTC-----GCAGACTGTTGTGGA---- 895
BSNT_06189 912 CCATTTATTTATGAAA--------AGGGGTGA---TGCAG---GAAAGTC 947
||.||| |.|||.|| |.||| ||
BSU11055___yi 896 ----------ATAAAAAACACAAGAAGGGAGAGGTTTCAGTTTGA----- 930
BSNT_06189 948 ATTATAG 954
BSU11055___yi 930 ------- 930
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