Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06188 and BSU11040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:48
# Commandline: needle
# -asequence dna-align/BSNT_06188.1.22522.seq
# -bsequence dna-align/BSU11040___yitM.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06188-BSU11040___yitM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06188-BSU11040___yitM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06188
# 2: BSU11040___yitM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 720
# Identity: 350/720 (48.6%)
# Similarity: 350/720 (48.6%)
# Gaps: 246/720 (34.2%)
# Score: 749.0
#
#
#=======================================
BSNT_06188 1 ATGGATATGCGTTTAGCTGCTCAAGATTTAAAACTTAAA-------TTGG 43
||.|| ||
BSU11040___yi 1 ----------------------------------TTGAAGAAGGCGTT-- 14
BSNT_06188 44 TCTATTTAATGCTCATTGTGTTGGTTGTAT---------CTATATTTTCT 84
||||.| || ||.|||.|||||||| ||.|.|||| |
BSU11040___yi 15 TCTAGT--AT-----TTTTGTCGGTTGTATTGGTGACGACTGTGTTTT-T 56
BSNT_06188 85 GGTGCAACACC-------TATTACTCAAGCAAAGAATCTACATAAATACT 127
||||.|.||.| |.|..|.||.||||||.|.|| |.|.||.|
BSU11040___yi 57 GGTGAAGCAGCAAGAAAGTGTGGCACAGGCAAAGCAGCT---TGAGTATT 103
BSNT_06188 128 CAGGTGAAGAAATTTTT----GCTGGAATTGTTTTTGGTCAAGGTGAAAT 173
|||||||.||||||||| ||| ||||.||||..|||||.|||.|
BSU11040___yi 104 CAGGTGAGGAAATTTTTAAAGGCT----TTGTGTTTGCCCAAGGGGAAGT 149
BSNT_06188 174 CTCG-AAAAAATTTCCTGAAATTTGGAACACCAA-CGATTATAATGTTAG 221
|.| |||.|..||||.||..|.|..||.| || ||||.|
BSU11040___yi 150 -TGGCAAACAGCTTCCAGAGGTCTTTAATA--AAGCGATGA--------- 187
BSNT_06188 222 AAATTCAGATAAA-TCTAAAGAACTTACTCAA------TTGTTAATAAG- 263
||||.||| ||.|.|.||...|..||| |||..|||.||
BSU11040___yi 188 -----CAGACAAACTCAACACAAAACAGGCAAAGGCTTTTGCCAATCAGG 232
BSNT_06188 264 -------TGAAATGAAAAAAATCGATCCTCAATATTTTAACGATTTGAAA 306
|||.||.||||||...|||.||.|.|.||||.|..|..||||.
BSU11040___yi 233 TTGTCGCTGATATTAAAAAAGAGGATGCTGACTTTTTTGATAACCTGAAG 282
BSNT_06188 307 AAATCGGTTTA--------------TGAAA-AGGATCTTAAATTAATTGA 341
|||.|.||||| ||||| .|| ||.||.||.
BSU11040___yi 283 AAAGCTGTTTACAGCAAAGATGCATTGAAAGTGG-------ATGAACTGC 325
BSNT_06188 342 TGAGGAATTCAG--CAA--GGGTGGAGATCTTTTAAAAGAAGCTGCTGAG 387
|||..||..||| ||| .|.||.||| |||||.||..||||..
BSU11040___yi 326 TGAAAAAAGCAGGTCAAATCGTTGAAGA------AAAAGTAGAAGCTGCA 369
BSNT_06188 388 AAGGTTAACATGGGCAGTTCTGA-------ACATGCGGA-TTTAGTCTCA 429
|||| |.||.|.|..||||.| ||||.|.|| ||.||.|..|
BSU11040___yi 370 AAGG---AAATCGCCGCTTCTAAGGATGATACATCCAGAGTTCAGGCCGA 416
BSNT_06188 430 GGT----AAATGTGTTGA-------AACTCTGGGTGCTGCTATTTTTGTT 468
|.| ||...|||||| ||||.| |.||..|||.|||.||
BSU11040___yi 417 GCTTGTCAACACTGTTGATACCGCTAACTAT---TTCTATTATGTTTCTT 463
BSNT_06188 469 TTGGTACTAGCAGCAGGTGGCGCTGTAGACTATCTGTACGTTTATAATGC 518
.||.|.|| ||||||||||.| |||
BSU11040___yi 464 ATGTTGCT-GCAGCAGGTGCC------------CTG-------------- 486
BSNT_06188 519 AACTAAATTTTGGGGAATAACTTCT----AATGATAAAGAGTCTAAACTT 564
|||.|| ||.| |||| |.|||||....|.|.| ||
BSU11040___yi 487 ------ATTCTG----ATCA-TTCTCGCCATTGATATTACGCCGA---TT 522
BSNT_06188 565 GCGA---CAGA-GATGTTTGTTAAGGAT------GTTGCA---------- 594
|||| |||| .|||| |||| .|.|||
BSU11040___yi 523 GCGATTTCAGACAATGT-------GGATCGCGAAATGGCAATCAGAACGC 565
BSNT_06188 595 -----GATAAACTGAACTAA 609
|||.||.|.|||||.
BSU11040___yi 566 TGGTTGATGAATTAAACTAG 585
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