Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01012 and BSU05870

See Amino acid alignment / Visit BSNT_01012 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:17:31
# Commandline: needle
#    -asequence dna-align/BSNT_01012.1.22522.seq
#    -bsequence dna-align/BSU05870___gmuF.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01012-BSU05870___gmuF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01012-BSU05870___gmuF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01012
# 2: BSU05870___gmuF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 948
# Identity:     406/948 (42.8%)
# Similarity:   406/948 (42.8%)
# Gaps:         534/948 (56.3%)
# Score: 1837.0
# 
#
#=======================================

BSNT_01012         0 --------------------------------------------------      0
                                                                       
BSU05870___gm      1 ATGACGCATCCATTATTTTTAGAGCCTGTCTTTAAAGAAAGACTATGGGG     50

BSNT_01012         0 --------------------------------------------------      0
                                                                       
BSU05870___gm     51 AGGGACGAAGCTTCGTGACGCTTTTGGCTACGCAATACCCTCACAAAAAA    100

BSNT_01012         0 --------------------------------------------------      0
                                                                       
BSU05870___gm    101 CAGGTGAGTGCTGGGCCGTTTCTGCACATGCCCATGGCTCGTCGTCTGTA    150

BSNT_01012         0 --------------------------------------------------      0
                                                                       
BSU05870___gm    151 AAAAATGGCCCGCTGGCAGGAAAGACACTTGATCAAGTATGGAAAGATCA    200

BSNT_01012         1 -------------------------------GTGTTTCCGCTGCTGGTAA     19
                                                    |||||||||||||||||||
BSU05870___gm    201 TCCAGAGATATTCGGGTTTCCGGATGGTAAGGTGTTTCCGCTGCTGGTAA    250

BSNT_01012        20 AGCTGCTGGACGCCAATATGGATCTCTCCGTGCAAGTCCATCCTGATGAT     69
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05870___gm    251 AGCTGCTGGACGCCAATATGGATCTCTCCGTGCAAGTCCATCCTGATGAT    300

BSNT_01012        70 GATTATGCAAAACTGCATGAAAATGGCGACCTTGGTAAAACG--------    111
                     |||||||||||||||||.||||||||||||||||||||||||        
BSU05870___gm    301 GATTATGCAAAACTGCACGAAAATGGCGACCTTGGTAAAACGGAGTGCTG    350

BSNT_01012       111 --------------------------------------------------    111
                                                                       
BSU05870___gm    351 GTATATCATTGATTGCAAAGATGACGCCGAACTAATTTTGGGACATCATG    400

BSNT_01012       111 --------------------------------------------------    111
                                                                       
BSU05870___gm    401 CAAGCACAAAGGAAGAGTTCAAACAACGAATAGAAAGCGGTGATTGGAAC    450

BSNT_01012       111 --------------------------------------------------    111
                                                                       
BSU05870___gm    451 GGGCTGCTGAGGCGAATCAAAATCAAGCCAGGAGATTTCTTTTATGTGCC    500

BSNT_01012       111 --------------------------------------------------    111
                                                                       
BSU05870___gm    501 AAGCGGTACACTCCATGCTTTATGTAAGGGAACCCTTGTCCTTGAAATCC    550

BSNT_01012       111 --------------------------------------------------    111
                                                                       
BSU05870___gm    551 AGCAAAACTCTGATACAACATATCGCGTATACGATTATGACCGCTGTAAT    600

BSNT_01012       112 ---------------------------------------------GTCAT    116
                                                                  |||||
BSU05870___gm    601 GACCAGGGCCAAAAAAGAACTCTTCATATAGAAAAAGCCATGGAAGTCAT    650

BSNT_01012       117 AACGATACCGCATATCGATAAAGTGCATACACCGGAAGTAAAAGAAGTTG    166
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05870___gm    651 AACGATACCGCATATCGATAAAGTGCATACACCGGAAGTAAAAGAAGTTG    700

BSNT_01012       167 GTAACGCTGAGATCATTGTTTATGTGCAATCAGATTATTTCTCAGTGTAC    216
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05870___gm    701 GTAACGCTGAGATCATTGTTTATGTGCAATCAGATTATTTCTCAGTGTAC    750

BSNT_01012       217 AAATGGAAGATTAGCGGCCGAGCTGCTTTTCCTTCACATCAAACCTATTT    266
                     ||||||||||||||||||||||||||||||||||||.|||||||||||||
BSU05870___gm    751 AAATGGAAGATTAGCGGCCGAGCTGCTTTTCCTTCATATCAAACCTATTT    800

BSNT_01012       267 GCTGGGGAGTGTTCTGAGCGGATCAGGACGAATCATAAATAATGGTATTC    316
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05870___gm    801 GCTGGGGAGTGTTCTGAGCGGATCAGGACGAATCATAAATAATGGTATTC    850

BSNT_01012       317 AGTATGAATGCAATGCAGGCTCACACTTTGTCTTGCCTGCGCATTTTGGC    366
                     |||||||||||||||||||||||||||||.|..||||||||||||||||.
BSU05870___gm    851 AGTATGAATGCAATGCAGGCTCACACTTTATTCTGCCTGCGCATTTTGGA    900

BSNT_01012       367 GAGTTTTCAATAGAAGGAACATGTGAATTCATGATATCTCATCCTTAA    414
                     ||.|||.|||||||||||||||||||||||||||||||||||||||||
BSU05870___gm    901 GAATTTACAATAGAAGGAACATGTGAATTCATGATATCTCATCCTTAA    948


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