Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00840 and BSU04870
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:17:16
# Commandline: needle
# -asequence dna-align/BSNT_00840___ydcR.1.22522.seq
# -bsequence dna-align/BSU04870___ydcR.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00840___ydcR-BSU04870___ydcR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00840___ydcR-BSU04870___ydcR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00840___ydcR
# 2: BSU04870___ydcR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1059
# Identity: 1026/1059 (96.9%)
# Similarity: 1026/1059 (96.9%)
# Gaps: 0/1059 ( 0.0%)
# Score: 4998.0
#
#
#=======================================
BSNT_00840___ 1 ATGGATGAGCTAAAACACCCCCCCCACGCTAACAGGGGGGTAGTAATCGT 50
|||||||||||||||||.||||||||||||||||||||||||||||||||
BSU04870___yd 1 ATGGATGAGCTAAAACAACCCCCCCACGCTAACAGGGGGGTAGTAATCGT 50
BSNT_00840___ 51 AAAAGAAGAGAATGAAACCGTTGAAAGTCCTTTAGTATCAATGGTTGACT 100
|||||||.|.||||||.||||||||||||||||.||||||||||||||||
BSU04870___yd 51 AAAAGAAAAAAATGAAGCCGTTGAAAGTCCTTTGGTATCAATGGTTGACT 100
BSNT_00840___ 101 ATATTCGAGTCTCTTTTAAAACTCATGATGTTGACAGAATTATTGAAGAG 150
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd 101 ATATTCGAGTCTCTTTTAAAACTCATGATGTTGACAGAATTATTGAAGAG 150
BSNT_00840___ 151 GTTCTTCATCTTAGCAAAGACTTTATGACTGAGAAACAATCTGGTTTCTA 200
||||||||.|||||||||||||||||||||||||||||||||||||||||
BSU04870___yd 151 GTTCTTCACCTTAGCAAAGACTTTATGACTGAGAAACAATCTGGTTTCTA 200
BSNT_00840___ 201 TGGCTACGTTGGCACGTATGAACTGGACTATGTCAAAGTCTTTTATTCTG 250
|||||||||||||||||||||||||||||||.||||||||||||||||||
BSU04870___yd 201 TGGCTACGTTGGCACGTATGAACTGGACTATATCAAAGTCTTTTATTCTG 250
BSNT_00840___ 251 CGCCGGATGACAACAGAGGTGTTTTGATAGAAATGTCCGGTCAAGGTTGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd 251 CGCCGGATGACAACAGAGGTGTTTTGATAGAAATGTCCGGTCAAGGTTGC 300
BSNT_00840___ 301 CGTCAATTTGAATCCTTCTTGGAATGCCGGAAGAAAACATGGTACGACTT 350
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd 301 CGTCAATTTGAATCCTTCTTGGAATGCCGGAAGAAAACATGGTACGACTT 350
BSNT_00840___ 351 CTTTCAAGATTGCATGCAACAAGGCGGTTCGTTCACTCGCTTTGATTTAG 400
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd 351 CTTTCAAGATTGCATGCAACAAGGCGGTTCGTTCACTCGCTTTGATTTAG 400
BSNT_00840___ 401 CTATTGATGATAAAAAGACATACTTTTCTATACCGGAACTGTTAAAGAAA 450
||||||||||||||||||||||||||||||||||.|||||||||||||||
BSU04870___yd 401 CTATTGATGATAAAAAGACATACTTTTCTATACCAGAACTGTTAAAGAAA 450
BSNT_00840___ 451 GCCCAAAAGGGCGAATGCATTTCACGGTTTAGAAAATCGGATTTCAATGG 500
|||||||||||||||||.||||||||.|||||||||||.|||||||||||
BSU04870___yd 451 GCCCAAAAGGGCGAATGTATTTCACGATTTAGAAAATCTGATTTCAATGG 500
BSNT_00840___ 501 CTCCTTAGGTCTATCTGATGGCATTACAGGCGGGACGACAATATATTTCG 550
||||||.|.|||||||||||||||||||||||||||||||||||||||||
BSU04870___yd 501 CTCCTTTGATCTATCTGATGGCATTACAGGCGGGACGACAATATATTTCG 550
BSNT_00840___ 551 GTTCTAAAAAGTCAGAAGCGTACCTTTGCTTTTATGAGAAAAACTATGAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd 551 GTTCTAAAAAGTCAGAAGCGTACCTTTGCTTTTATGAGAAAAACTATGAA 600
BSNT_00840___ 601 CAAGCAGAAAAGTATAACATTCCGTTAGAAGAACTAGGCGATTGGAATCG 650
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd 601 CAAGCAGAAAAGTATAACATTCCGTTAGAAGAACTAGGCGATTGGAATCG 650
BSNT_00840___ 651 TTATGAATTGCGGCTTAAAAATGAACGTGCACAAGTGGCTATAGATGCTT 700
|||||||||||||||||||||||||||||||||||||||.||||||||||
BSU04870___yd 651 TTATGAATTGCGGCTTAAAAATGAACGTGCACAAGTGGCGATAGATGCTT 700
BSNT_00840___ 701 TATTGAAAACAAAGGATTTAACCTTAATCGCTATGCAGATCATTAATAAC 750
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd 701 TATTGAAAACAAAGGATTTAACCTTAATCGCTATGCAGATCATTAATAAC 750
BSNT_00840___ 751 TATGTAAGGTTCGTTGATGCTGATGAAAACATCACTAGAGAGCATTGGAA 800
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04870___yd 751 TATGTAAGGTTCGTTGATGCTGATGAAAACATCACTAGAGAGCATTGGAA 800
BSNT_00840___ 801 AACGAGCCTTTTTTGGTCTGAATTTATAGGTGATGTTGGAAAACTTCCTT 850
|||||||||||||||||||||.||||||||.||||||||.|.||||||||
BSU04870___yd 801 AACGAGCCTTTTTTGGTCTGATTTTATAGGCGATGTTGGGAGACTTCCTT 850
BSNT_00840___ 851 TGTACGTCAAACCACAAAAAGACTTCTATCAAAAATCAAGAAACTGGCTT 900
|||||||||||||||||||||||||||||||.||||||||||||||||||
BSU04870___yd 851 TGTACGTCAAACCACAAAAAGACTTCTATCAGAAATCAAGAAACTGGCTT 900
BSNT_00840___ 901 CGTAACTCTTGTGCTCCCACTATGAAAATGGTGCTGGAAGCTGATCAGCA 950
|||||||||||||||||||||||||||||||||||.|||||||||.|.||
BSU04870___yd 901 CGTAACTCTTGTGCTCCCACTATGAAAATGGTGCTTGAAGCTGATGAACA 950
BSNT_00840___ 951 CTTAGGGAAAACTGATCTGTCAGATATGATCGCAGAAGCTGAACTGGCGG 1000
.|||||||||||.|||||||||||||||||.|||||||||||||||||.|
BSU04870___yd 951 TTTAGGGAAAACCGATCTGTCAGATATGATTGCAGAAGCTGAACTGGCTG 1000
BSNT_00840___ 1001 AAAAACATGAAAAAATGTTGAATGTGTTTATAGCTGATGTTGCTGACATG 1050
|.||||||.||||||||||..||||||.|||.||||||||||||||||||
BSU04870___yd 1001 ACAAACATAAAAAAATGTTAGATGTGTATATGGCTGATGTTGCTGACATG 1050
BSNT_00840___ 1051 GTGGTTTAA 1059
||.||||||
BSU04870___yd 1051 GTCGTTTAA 1059
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