Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00589 and BSU03340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:16:49
# Commandline: needle
# -asequence dna-align/BSNT_00589___yciA.1.22522.seq
# -bsequence dna-align/BSU03340___yciA.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00589___yciA-BSU03340___yciA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00589___yciA-BSU03340___yciA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00589___yciA
# 2: BSU03340___yciA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1063
# Identity: 750/1063 (70.6%)
# Similarity: 750/1063 (70.6%)
# Gaps: 302/1063 (28.4%)
# Score: 3619.5
#
#
#=======================================
BSNT_00589___ 1 ATGAATCAACATACGCTGCTTCCGAAAAAAACGGAGCGTCTTCAATACTT 50
||||||||||||||||||||.|||||||||||||||||||||||||||||
BSU03340___yc 1 ATGAATCAACATACGCTGCTCCCGAAAAAAACGGAGCGTCTTCAATACTT 50
BSNT_00589___ 51 TGGATCGGTCAGTCCGATCAAAGGCGAGAAACCAGTGGAAAAAGAGAAAA 100
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03340___yc 51 TGGATCGGTCAGTCCGATCAAAGGCGAGAAACCAGTGGAAAAAGAGAAAA 100
BSNT_00589___ 101 TGAAGGACCTGCAAAATATCAGGAAGGATTATTTTTTTGACATTCAGCAT 150
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03340___yc 101 TGAAGGACCTGCAAAATATCAGGAAGGATTATTTTTTTGACATTCAGCAT 150
BSNT_00589___ 151 GTAGGTGTCGCTAATGTGTCCCATCCAGTCACAATCACTTCTGCCATGAT 200
||||||||.|||||||||||||||||||||||||||||||||||||||||
BSU03340___yc 151 GTAGGTGTAGCTAATGTGTCCCATCCAGTCACAATCACTTCTGCCATGAT 200
BSNT_00589___ 201 GCCTGCCGAGCAAACAACGGCTGCGAACTTTACAATGACTTGTAATTTGC 250
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03340___yc 201 GCCTGCCGAGCAAACAACGGCTGCGAACTTTACAATGACTTGTAATTTGC 250
BSNT_00589___ 251 CGAGAAATCAGAAGGGGATTAACATGAGCCGGTTAACAGAGCTGCTGCAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03340___yc 251 CGAGAAATCAGAAGGGGATTAACATGAGCCGGTTAACAGAGCTGCTGCAA 300
BSNT_00589___ 301 GTCTATCATCAAAATGGCTGGATTCTCTCATTTTCCTCTCTTCAGCAATT 350
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03340___yc 301 GTCTATCATCAAAATGGCTGGATTCTCTCATTTTCCTCTCTTCAGCAATT 350
BSNT_00589___ 351 CACGAAAGAGCTTGCAGAAAACATGGACACATCACCTGCCTCAGTTGAAG 400
.|||||||||||||||||||||||||||||||||.|||||.|||||||||
BSU03340___yc 351 TACGAAAGAGCTTGCAGAAAACATGGACACATCATCTGCCACAGTTGAAG 400
BSNT_00589___ 401 TGAGGTTTCCGTGGTTTTTCGAACGGAAAAGTCCGAAGCTTGAGAAAGCG 450
|||||||||||||||||||||||||||||||.||||||||||||||||||
BSU03340___yc 401 TGAGGTTTCCGTGGTTTTTCGAACGGAAAAGCCCGAAGCTTGAGAAAGCG 450
BSNT_00589___ 451 GGTTTGATGCATGCTGATATATTCATGTCTGTCACCTATCGCAAAGATCA 500
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03340___yc 451 GGTTTGATGCATGCTGATATATTCATGTCTGTCACCTATCGCAAAGATCA 500
BSNT_00589___ 501 GCCGTTTAAACAGCGTGCCGGCATCTCAGCAAAAGTAACGACTCTGTGCC 550
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03340___yc 501 GCCGTTTAAACAGCGTGCCGGCATCTCAGCAAAAGTAACGACTCTGTGCC 550
BSNT_00589___ 551 CTTGCTCCAAGGAAATCAGCGAATACAGTGCCCATAATCAGAGGGGAACG 600
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03340___yc 551 CTTGCTCCAAGGAAATCAGCGAATACAGTGCCCATAATCAGAGGGGAACG 600
BSNT_00589___ 601 GTCAGCATTTGGGCGGATATTCACCCGGCTGCATC--------------- 635
|||||||||||||||||||||||||||||.|||||
BSU03340___yc 601 GTCAGCATTTGGGCGGATATTCACCCGGCCGCATCGCTGCCAAGTGATGT 650
BSNT_00589___ 635 -------------------------------------------------- 635
BSU03340___yc 651 TAAAGCTGATTTGCTTCACGCCGCAGAATCAAATGCTTCTGCGAGACTGC 700
BSNT_00589___ 635 -------------------------------------------------- 635
BSU03340___yc 701 ATCCGGTATTGAAGCGGCCTGATGAAAAAGCCGTGACAGAAACGGCCTAT 750
BSNT_00589___ 636 ---------------------------------------GCTGCTGATTT 646
|||||.|||||
BSU03340___yc 751 GAAAACCCGAGATTTGTTGAGGATCTCGCCCGGCTGATTGCTGCAGATTT 800
BSNT_00589___ 647 GTTTGAGCTTGAATGGGTGTCGGCCTTTGAGATTGAATGCCGCAATGAAG 696
|||||||||||||||||||||.||||||||||||||||||||.|||||||
BSU03340___yc 801 GTTTGAGCTTGAATGGGTGTCAGCCTTTGAGATTGAATGCCGAAATGAAG 850
BSNT_00589___ 697 AATCGATCCATCTCCACGATGCCTATGCGAAGCTGTGTTTTTCGAAGGAA 746
|||||||||||||.||||||||||||||||||||||||||||||||||||
BSU03340___yc 851 AATCGATCCATCTTCACGATGCCTATGCGAAGCTGTGTTTTTCGAAGGAA 900
BSNT_00589___ 747 GTGGATAAAATATGAAACTCTCATTATTCATTATTGCAGTTCTTATGCCA 796
|||||||||||||||
BSU03340___yc 901 GTGGATAAAATATGA----------------------------------- 915
BSNT_00589___ 797 GCCTGCCTGCTGTCAACCTGCTCCGAACATGCAGAAGAACACGCAAGTAT 846
BSU03340___yc 915 -------------------------------------------------- 915
BSNT_00589___ 847 CAATACAAAGAAAACGGTCGAAAACATAACGGACGTTCGAAAAACAGCAA 896
BSU03340___yc 915 -------------------------------------------------- 915
BSNT_00589___ 897 AAATAAGCATTGA 909
BSU03340___yc 915 ------------- 915
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