Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06288 and BPUM_3733
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:43
# Commandline: needle
# -asequence dna-align/BSNT_06288___trmE.1.24716.seq
# -bsequence dna-align/BPUM_3733___trmE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06288___trmE-BPUM_3733___trmE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06288___trmE-BPUM_3733___trmE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06288___trmE
# 2: BPUM_3733___trmE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1394
# Identity: 1044/1394 (74.9%)
# Similarity: 1044/1394 (74.9%)
# Gaps: 28/1394 ( 2.0%)
# Score: 3766.0
#
#
#=======================================
BSNT_06288___ 1 ATGGATACAATTGCGGCAATTTCCACACCGATGGGAGAAGGCGCGATTGC 50
||||||||||||||.||.|||||.|||||||||||.|||||.||.||.||
BPUM_3733___t 1 ATGGATACAATTGCAGCCATTTCGACACCGATGGGTGAAGGAGCAATCGC 50
BSNT_06288___ 51 GATTGTACGGTTGAGCGGACCAGAAGCCATTCAAATCGCAGATAAAATTT 100
||||.|.||.||.||.||.||.|||||..|.||.|||||.||||..||.|
BPUM_3733___t 51 GATTATTCGTTTAAGTGGGCCTGAAGCGGTGCAGATCGCTGATAGGATGT 100
BSNT_06288___ 101 ATAAGGGACCGAAGGGGAAAACACTCAGCTCGGTCGAATCACATACGATT 150
||||.|||||.||||.|||||.|||....||.||.||.||.|||||.||.
BPUM_3733___t 101 ATAAAGGACCTAAGGAGAAAAAACTTGTATCAGTGGATTCTCATACCATC 150
BSNT_06288___ 151 CATTATGGTCATATCGTAGA---CAGACCTTCGGATCGTGTCGTTGAGGA 197
||||||||||||||.||.|| .|||.|| ||||..||..|.||.||
BPUM_3733___t 151 CATTATGGTCATATTGTGGATGCAAGAACT---GATCAAGTAATAGAAGA 197
BSNT_06288___ 198 AGTAATGGTATCAGTGTTAAAAGCGCCGAGAACTTTTACACGGGAAGATG 247
.||.|||||.|||||..|...||||||.|.|||.|||||..|.|||||.|
BPUM_3733___t 198 GGTCATGGTGTCAGTACTTCGAGCGCCAAAAACATTTACGAGAGAAGACG 247
BSNT_06288___ 248 TTATCGAGATAAACTGTCACGGGGGAATTGTGACTGTGAACCAAGTGCTT 297
||||.|||||.|||||.||.||.||||||||.||.||.||..||||..|.
BPUM_3733___t 248 TTATTGAGATTAACTGCCATGGCGGAATTGTAACGGTCAATAAAGTATTG 297
BSNT_06288___ 298 CAGCTCGCATTGAGAGAGGGGGCGAGACTGGCAGAGCCTGGCGAATTTAC 347
|||||.||.||.|||||.||.||.|||.|.||.|||||.||.||.||.||
BPUM_3733___t 298 CAGCTTGCTTTAAGAGAAGGAGCAAGATTAGCGGAGCCAGGTGAGTTCAC 347
BSNT_06288___ 348 GAAACGTGCGTTTTTAAACGGGCGAATCGATCTTTCACAGGCGGAAGCGG 397
.||.|||||.||.|||||.||..||||.|||||.||.||.||.||.||.|
BPUM_3733___t 348 AAAGCGTGCTTTCTTAAATGGAAGAATAGATCTATCGCAAGCAGAGGCTG 397
BSNT_06288___ 398 TTATGGACTTAATCAGAGCGAAAACGGACCGGGCAATGAACGTTGCTATG 447
|.||||||||.||..|.||.||.|||||.|||||.|||||.||.||.||.
BPUM_3733___t 398 TCATGGACTTGATTCGGGCAAAGACGGATCGGGCGATGAATGTAGCGATC 447
BSNT_06288___ 448 AATCAAATGGAAGGGCGTCTTTCTGCTTTGGTGCGCCGTTTGCGCAGTGA 497
|.|||||||||.||.|||||.||.|.||||||.|..||..|||||.|.||
BPUM_3733___t 448 ACTCAAATGGAGGGACGTCTCTCCGGTTTGGTTCAGCGACTGCGCGGCGA 497
BSNT_06288___ 498 GATTTTAGAAACACTGGCCCATGTTGAGGTGAATATCGATTATCCGGAGT 547
|||..|||||||||||||.|||.||||.||.|||||.||.||.||.||||
BPUM_3733___t 498 GATCCTAGAAACACTGGCGCATATTGAAGTCAATATTGACTACCCTGAGT 547
BSNT_06288___ 548 ATGATGATGTAGAGGAAATGACGCATCAGATTTTAGTCGAAAAGGCAACC 597
||||.|||||.||.||||||||.||||...|.|||||.|||||.||.||.
BPUM_3733___t 548 ATGACGATGTTGAAGAAATGACACATCGCGTCTTAGTGGAAAAAGCGACA 597
BSNT_06288___ 598 GCCGTGAAAAAGGAAATTGAGGCGCTGCTGAGGACTTCTGAGCAA-GGAA 646
.|.||.|||||.|||||||||.||||.||...|||||||.|.||| ||||
BPUM_3733___t 598 TCGGTCAAAAAAGAAATTGAGTCGCTACTCTCGACTTCTCACCAAGGGAA 647
BSNT_06288___ 647 AAATCTTGCGTGAAGGTCTT-TCTACCGTCATTATCGGCCGGCCGAACGT 695
||.|||| ||.| |||.||| ||.||.||||||||.||..||||.||.||
BPUM_3733___t 648 AATTCTT-CGAG-AGGGCTTATCCACTGTCATTATAGGAAGGCCAAATGT 695
BSNT_06288___ 696 AGGAAAATCATCTCTT-CTGAACAGCCTCGTTCATGAGGCAAAAGCCATT 744
.|||||.||.|| ||| .||||.|||||.||.||.||..||||.||||||
BPUM_3733___t 696 TGGAAAGTCTTC-CTTGTTGAATAGCCTTGTACAGGAAACAAAGGCCATT 744
BSNT_06288___ 745 GTAACCGATATTCCCGGAACGACACGGGATGTAATTGAGGAATACGTGAA 794
||.||.||||||||.|||||.||..|.||.||.|||||||||||.|||||
BPUM_3733___t 745 GTCACAGATATTCCTGGAACTACGAGAGACGTTATTGAGGAATATGTGAA 794
BSNT_06288___ 795 TGTAAGGGGCGTCCCGCTTCGTCTGGTTGATACAGCAGGTATTCGCGAAA 844
||||.|.|||||.||.||.|||||.||.|||||.||.|||||.||.||.|
BPUM_3733___t 795 TGTACGAGGCGTACCTCTCCGTCTAGTCGATACTGCGGGTATACGTGAGA 844
BSNT_06288___ 845 CAGAGGATATTGTTGAGCGAATCGGTGTTGAACGTTCTCGCCAGGTTCTA 894
|||||||.|||||||||||.||.||.||||||||.|||.|.|||||..||
BPUM_3733___t 845 CAGAGGACATTGTTGAGCGTATAGGGGTTGAACGATCTAGACAGGTCTTA 894
BSNT_06288___ 895 AAGGAAGCGGACCTGATTTTACTTGTGCTTAATTATAGTGAAGAGCTTTC 944
||.|||||.||||||||||||||||||||.||||||||.|||||..|.||
BPUM_3733___t 895 AAAGAAGCTGACCTGATTTTACTTGTGCTCAATTATAGCGAAGAATTATC 944
BSNT_06288___ 945 TGAAGAAGACGTGAAGCTTTTTGAAGCCGT-TGAGGGCATGGATGTTATC 993
.||||||||..|.||.||||||||.||.|| |.| ||.||||||.|.|||
BPUM_3733___t 945 GGAAGAAGATATTAAACTTTTTGAGGCTGTCTCA-GGTATGGATATCATC 993
BSNT_06288___ 994 GTGATTTTGAATAAGACTGACCTTGAGGCGAAGATTGACACTG----AAC 1039
||||||.||||||||||.|||||||||.|.|||.|||| || ||.
BPUM_3733___t 994 GTGATTGTGAATAAGACAGACCTTGAGCCTAAGCTTGA---TGTAGAAAA 1040
BSNT_06288___ 1040 GTGTCCGTGAGC--TTGCCAATGGA-CGTCCAGTTGTTACGACATCTCTT 1086
| ||| .||| ||..|||.||| |||||.||.||.||.|||||..|.
BPUM_3733___t 1041 G-GTC---AAGCAGTTAGCAAAGGATCGTCCGGTGGTCACTACATCATTA 1086
BSNT_06288___ 1087 TTAAAAGAGGAAGGCATCAATGATCTGGAAGAAGCGATTCAATCATTGTT 1136
|||.||||..|.|||||..||||.||.|||...||.|||||||||.||||
BPUM_3733___t 1087 TTACAAGAAAAGGGCATTGATGAGCTTGAAATGGCAATTCAATCACTGTT 1136
BSNT_06288___ 1137 CTACACGGGTGCCATTGAAAGCGGTGATCTGACTTATGTCAGCAACACAC 1186
||.|||.||..|.||||||||.||.|||.|.||.|||||.||.||.|||.
BPUM_3733___t 1137 CTTCACTGGATCAATTGAAAGTGGAGATTTAACGTATGTAAGTAATACAA 1186
BSNT_06288___ 1187 GTCACATCTCTATTTTACAGCAAGCAAAACGCGCCATTGAAGATGCGCTT 1236
|.||.||..||.||.|.|||..||||||||...|.|||||||||||.|||
BPUM_3733___t 1187 GGCATATTGCTCTTCTTCAGGCAGCAAAACAATCAATTGAAGATGCACTT 1236
BSNT_06288___ 1237 AGCGGCATCGAACAGGATGTCCCGATCGACATGGTGCAAATTGACCTTAC 1286
...||.||.|||..||||||.||.||||||||.||.|||||.||..|.||
BPUM_3733___t 1237 GAAGGAATTGAAATGGATGTACCAATCGACATTGTTCAAATAGATTTAAC 1286
BSNT_06288___ 1287 AAGATGCTGGGAGCTTTTAGGGGAAATCATTGGAGATTCTGTCCACGAAA 1336
|.|.||||||||.|...|.||.|||||.||.||||||.||||.||.||||
BPUM_3733___t 1287 ACGCTGCTGGGAACAGCTCGGTGAAATTATAGGAGATGCTGTTCATGAAA 1336
BSNT_06288___ 1337 GCTTAATTGATCAGCTCTTTTCACAATTCTGTTTAGGAAAATAA 1380
||||.|||||||||.|.||.||.|||||||||||||||||.|||
BPUM_3733___t 1337 GCTTGATTGATCAGTTATTCTCTCAATTCTGTTTAGGAAAGTAA 1380
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