Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06278 and BPUM_3726
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:43
# Commandline: needle
# -asequence dna-align/BSNT_06278___yyaC.1.24716.seq
# -bsequence dna-align/BPUM_3726___yyaC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06278___yyaC-BPUM_3726___yyaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06278___yyaC-BPUM_3726___yyaC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06278___yyaC
# 2: BPUM_3726___yyaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 711
# Identity: 430/711 (60.5%)
# Similarity: 430/711 (60.5%)
# Gaps: 129/711 (18.1%)
# Score: 1283.0
#
#
#=======================================
BSNT_06278___ 1 ------------------------------------------------AT 2
||
BPUM_3726___y 1 TTGTTTCCGTATACTGTTACTAACTACTATGACAAGGAAGTGAGACCTAT 50
BSNT_06278___ 3 GAATCGAAAAGGCGGGCTTTTTTCCTCTCAGGAA-CGAGT-AAAGCAATA 50
||||.|.||...|||.||||||| |.||.|| .|.|| |||| ||||
BPUM_3726___y 51 GAATAGCAAGAACGGTCTTTTTT----TTAGAAATAGGGTGAAAG-AATA 95
BSNT_06278___ 51 TGTTTCACATACAGATGCTGCAGCGGCA--AAACAAATCCAAACCATCCT 98
.||.||.|||||.|||.| .|.||.|| .||||..|..|||..|| |
BPUM_3726___y 96 CGTGTCCCATACGGATAC--AAACGCCATTCAACAGCTTAAAAGTAT--T 141
BSNT_06278___ 99 TTCTT----CATCCTTACGTAAAGCTGCCGGCAA---ACCAATTGTCGTG 141
||.|| |||| |.|..||| ||.||.|| |||..|||.|.|.
BPUM_3726___y 142 TTATTCTCGCATC--TTCAGAAA---GCAGGAAAAAGACCCGTTGCCATC 186
BSNT_06278___ 142 GTTTGTATCGGAACAGACCGTTCAACCGGTGACTCATTAGGCCCGCTCGT 191
||||||||.|||||||||||.|||||.||.|||||..||||.||.||.||
BPUM_3726___y 187 GTTTGTATTGGAACAGACCGCTCAACTGGCGACTCTCTAGGTCCACTTGT 236
BSNT_06278___ 192 AGGGATGAAACTCAAACAGATGCAGCTC---------ACCAGATTCCATG 232
.||.|..||.|| |.|||.|| |..||.|| ||||
BPUM_3726___y 237 TGGTACAAAGCT--------TTCAGGTCTTGATTTGAAAAAGCTT-CATG 277
BSNT_06278___ 233 TCTACGGAACCTTATCTGACCCCGTCCATGCTGTGAACATGAAGGATAAA 282
|.||.|||||..|.||||||||.||.|||||.||.||..|.||.||.||.
BPUM_3726___y 278 TATATGGAACGCTCTCTGACCCAGTTCATGCGGTTAATTTAAAAGAAAAG 327
BSNT_06278___ 283 ATCAATGACATTCATAAATTACATAAAAACCCATTTGTTATAGCGGTGGA 332
.|...|||.|||.|..||...||||||.|.||||||.||.||||..|.||
BPUM_3726___y 328 CTTGCTGAAATTGAACAAGCTCATAAACATCCATTTATTGTAGCAATTGA 377
BSNT_06278___ 333 TGCATGCTTAGGCCGCGTTAAGAGTGTGGGTTCATTTCAAATCGGGGACG 382
|||.||.|||||..|.||.||.|||||.||.||.||.|||||.||.||.|
BPUM_3726___y 378 TGCCTGTTTAGGAAGAGTGAAAAGTGTAGGCTCCTTCCAAATTGGCGATG 427
BSNT_06278___ 383 GGCCATTAAAGCCCGGAGCCGGTGTGCAAAAAGACCTTCCTGAAGTGGGA 432
|.||.||||||||.|||||.|||||.||||||||.||.||.||.||.|||
BPUM_3726___y 428 GACCGTTAAAGCCTGGAGCGGGTGTACAAAAAGAGCTGCCAGAGGTAGGA 477
BSNT_06278___ 433 GATCTTCATATTAACGGAATCGTAAATGTCAGCGGTTTTATGGAATATTT 482
|||.||||||||||.||.|||||.|||||.|||||.|||||||||||.||
BPUM_3726___y 478 GATATTCATATTAATGGGATCGTCAATGTGAGCGGCTTTATGGAATACTT 527
BSNT_06278___ 483 TGTATTACAAAATACTAGAC-TCAACTTGGTCATGAATATGGCAAAT--- 528
.||..|.|||||.||..|.| |||.||| ||||||..||||||.|||
BPUM_3726___y 528 CGTTCTCCAAAACACACGCCTTCATCTT-GTCATGTCTATGGCCAATACA 576
BSNT_06278___ 529 -GTTCTAGCGGAAGGT----------TTGAGTTTAACAGATCGGAC-AGA 566
.|||| |||.|| |||| |..||..|||.|||| |||
BPUM_3726___y 577 CTTTCT----GAAAGTCTATCTCATATTGA-TCAAATGGATTGGACAAGA 621
BSNT_06278___ 567 GTGGAGGCAAGAA---------CGCCTTAACCCGCTGCAAAGGCTCACTG 607
| ||.|| |.|.||...||..|.||||...||||||
BPUM_3726___y 622 G-------AAAAAAGTCGTTCTCTCTTTGCTCCTATTCAAAATATCACTG 664
BSNT_06278___ 608 GGCGCATATAA 618
||.|.||||||
BPUM_3726___y 665 GGAGAATATAA 675
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