Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03930 and BPUM_3709
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:25
# Commandline: needle
# -asequence dna-align/BSNT_03930___yrhM.1.24716.seq
# -bsequence dna-align/BPUM_3709___yrhM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03930___yrhM-BPUM_3709___yrhM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03930___yrhM-BPUM_3709___yrhM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03930___yrhM
# 2: BPUM_3709___yrhM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 937
# Identity: 564/937 (60.2%)
# Similarity: 564/937 (60.2%)
# Gaps: 158/937 (16.9%)
# Score: 1444.0
#
#
#=======================================
BSNT_03930___ 1 ATGGATAAGAGATT----ACAGCAATTAAGAGAAGAATA--TAAAAATGT 44
||||||||| .||| |||| ||||.|||.||||| ||.||| |
BPUM_3709___y 1 ATGGATAAG-CATTTGGAACAG---TTAAAAGAGGAATATTTAGAAA--T 44
BSNT_03930___ 45 TCCGATTCCTAAAGAATTGGATATCATTGTTGAA--AAAGCCCTTCAGCA 92
.||.|||||....|||||.|||...||.|||||| || |.||
BPUM_3709___y 45 CCCTATTCCGCCGGAATTCGATGCTATGGTTGAACGAA---CATT----- 86
BSNT_03930___ 93 AGAACCAAAAAAGAAAAGAATCGTCATGTGGCCGACATCAGCAGCAA--- 139
|.|||.||||||.||| ||.|.||||.| .||||||
BPUM_3709___y 87 AAAACGAAAAAACAAA--AAACCTCATTT-----------CCAGCAATGG 123
BSNT_03930___ 140 -------------TCGCTGCAGCTATTTTATTCACTG---CGCTTGTTAA 173
|.|||||.|||..|||||| || ||..|||.||
BPUM_3709___y 124 ACGATCGGACTTGTTGCTGCGGCTGCTTTATT---TGTCACGACTGTGAA 170
BSNT_03930___ 174 TATCAACCCTGACGCTGCTCAG-GCTATGTCA-AGGATCCCTGTCATCGG 221
|.|||..||..|.||.|| .|| ||.||.||| ||| |.||..||||.||
BPUM_3709___y 171 TGTCAGTCCACAGGCGGC-AAGAGCGATTTCAGAGG-TACCGATCATTGG 218
BSNT_03930___ 222 CAAAATCGTCAAAGCGATCACCTTTATTGAAATCAAAGAG---GAAAAAG 268
|.|..|.||.||||...|.||.||.|.||||.|.|||.|| ||..|||
BPUM_3709___y 219 CGAGCTGGTGAAAGTTGTGACATTCACTGAATTTAAAAAGAGCGACCAAG 268
BSNT_03930___ 269 --ACCAATCAAGCATTGATGTCAAAACACC-TGCTTTGTCCGGGCTTTCT 315
||.||| |||||..|.|||||||| ..|.|| ||.||||||
BPUM_3709___y 269 GAACGAAT-----ATTGACCTTAAAACACCACACGTT-TCAGGGCTT--- 309
BSNT_03930___ 316 AATAAAGAGCTGGAAA--------ACAGCATTAACCAAAAATACTTGAAA 357
.|.|..||||| |||||.|.||.||||||||.||....
BPUM_3709___y 310 -----GGGGACGGAAAATTACAAGACAGCCTGAATCAAAAATATTTAGCT 354
BSNT_03930___ 358 GAAAGCCAGCAGCTGTATAAAGAGTTTATACAGTCCACATCCAAAA---- 403
||||.|.|..||||||||.||||.||...|.||...|| |||
BPUM_3709___y 355 GAAAACAAAAAGCTGTATCAAGATTTCGAAAAGGAAAC-----AAAGGGT 399
BSNT_03930___ 404 -ACAAAAAAGGGCATCTCAGCATCTACAGTG-----ATTACGAGACGGTC 447
|.|||||.||.|||.|.|| |.||.||.| ||.|.|.|| ..
BPUM_3709___y 400 TATAAAAATGGTCATTTGAG--TGTAGAGAGCGGATATGAAGTGA---AA 444
BSNT_03930___ 448 ACAGACA--CGCCAGAT--TTACTCTCTATCCGG-CGCAATATTGAAAAA 492
|||.||| ..|||.|| || ||.||| || ||..|.|..|.||..
BPUM_3709___y 445 ACAAACAATGACCAAATCCTT--TCACTA---GGTCGATACAAGGTAACG 489
BSNT_03930___ 493 ACACAAGCATCTTC--CTACACACAAAGCCGTTATAT--TACAATTGACA 538
||.||.||.|||.| | |.|...||.|.| |||| |||.||.||.|
BPUM_3709___y 490 ACTCAGGCTTCTGCGGC-AGAGGAAATGAC---ATATGATACGATCGATA 535
BSNT_03930___ 539 AAAAGAATGATATTTTACTTACATTAAAAAGCTTATTCAAAGATGAGCGC 588
|.||.||..||.|..|..|||||||...|||..|.||.||||||||.||.
BPUM_3709___y 536 AGAAAAACCATGTACTCATTACATTGCCAAGTCTGTTTAAAGATGATCGG 585
BSNT_03930___ 589 TATATTAAAGTCATCAGTCAAAATATTAGAGAGCAAATGAAACAGCAAAT 638
||||||.|.||.||.|||.|||||||||.|||.||||||||..||||.||
BPUM_3709___y 586 TATATTGATGTGATTAGTGAAAATATTAAAGAACAAATGAAGAAGCAGAT 635
BSNT_03930___ 639 GAAGGAAGATCCAAATAAAATATATTGGCTCACTGACGAAGAT---GCAG 685
|||.||||||.|||||||.||.||.|||.|.||..|..||||| |..|
BPUM_3709___y 636 GAAAGAAGATTCAAATAAGATTTACTGGATGACCAAGCAAGATATGGTTG 685
BSNT_03930___ 686 AACCGTTCAAAACGATTCTTCCTGATCAGACGTTTTA---CATTACTGAA 732
|.|||||.||.|.|||||..||.||.||.|..||.|| ||.|.|..||
BPUM_3709___y 686 ATCCGTTTAAGAAGATTCAGCCAGACCAAAGCTTCTATATCAATTCAAAA 735
BSNT_03930___ 733 GACCATAAACTTGTGATCTCATTTGACGAATATGAAGTCGCCCCCGGCTA 782
|.| |||||.|||||.||.|||.|.||||||||.||.||.||.||.||
BPUM_3709___y 736 GGC---AAACTGGTGATTTCCTTTAATGAATATGATGTGGCGCCTGGTTA 782
BSNT_03930___ 783 TATGGGCGTTACCGAGTTTACAATTCCAACAAGCGTCATTTCAAA----- 827
.||||||||....||.|||||.|||||||||||.||..| |||
BPUM_3709___y 783 CATGGGCGTAGTTGAATTTACGATTCCAACAAGTGTGCT---AAAGGATA 829
BSNT_03930___ 828 --CTTGCTCGTGGGAGAACGTTAT----ATTCGATAA 858
|||| || |.||.||| ||||..|||
BPUM_3709___y 830 TTCTTG-TC-------AGCGATATGTACATTCATTAA 858
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