Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06224 and BPUM_3707
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:41
# Commandline: needle
# -asequence dna-align/BSNT_06224___yybS.1.24716.seq
# -bsequence dna-align/BPUM_3707___yybS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06224___yybS-BPUM_3707___yybS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06224___yybS-BPUM_3707___yybS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06224___yybS
# 2: BPUM_3707___yybS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1080
# Identity: 589/1080 (54.5%)
# Similarity: 589/1080 (54.5%)
# Gaps: 273/1080 (25.3%)
# Score: 1342.0
#
#
#=======================================
BSNT_06224___ 1 ------------------GTGAAACAAACGAGAGCTTTAATGGAAGGTGC 32
|||||||||||.|.|||.|||.|.||.||.||
BPUM_3707___y 1 TTGGATAGAGGTGAAGGTGTGAAACAAACAAAAGCGTTAGTAGAGGGCGC 50
BSNT_06224___ 33 TATTTTAATCAGTCTGTTTGCGATCATTACGCTTCTGGTCGTTTATGTTC 82
|||..|.||||||.|.||..|..||||.||||| || |||||.|..
BPUM_3707___y 51 TATCATGATCAGTATTTTCTCTGTCATGACGCT----GT--TTTATTTGT 94
BSNT_06224___ 83 CTGTG-----ATTGGAACAATTCTGTTATTTGCA-CTG--CCGCTGCCAA 124
.|||| ||| |.|.|||.|.||.|||..| ||| |||.|.||.|
BPUM_3707___y 95 ATGTGCCGCTATT--ATCCATTATTTTCTTTCTAGCTGCTCCGATTCCGA 142
BSNT_06224___ 125 TGATCTTGTATACGATCAGACATGGATTGAAGCTAGGGATATGGATG--G 172
|.|||.|.|||||.|||||.||.||.|||||...||| .||.|.|| |
BPUM_3707___y 143 TCATCCTCTATACAATCAGGCACGGCTTGAAAAAAGG--AATTGCTGCTG 190
BSNT_06224___ 173 GCGCTGTC-----AGTCTTCCGGTTGTTTTTATTGTCGGGTCCTTTAACG 217
|||||.|| |||..||.|.| ||||.||| |||||..||||.|
BPUM_3707___y 191 GCGCTATCGGGATAGTGATCAGCT--TTTTAATT---GGGTCTATTAATG 235
BSNT_06224___ 218 GGCTTAT---TGTAGCTTTTATGTCAGCTTGC-GCCGGCATT-GCCATGG 262
|.||.|| ||...|..| ||.|.|||| |.||| ||| |.|||||
BPUM_3707___y 236 GACTCATGACTGCGCCCGT----TCTGATTGCTGTCGG-ATTAGGCATGG 280
BSNT_06224___ 263 GACATTTTTTCAAAAGGAAA---GAGCCCGGGCACGCCATTATTTCGGGC 309
| |.|||||.|.||.|.| .||||||||.|.|||||.|||.|.||.
BPUM_3707___y 281 G---TGTTTTCTACAGCAGACGGCAGCCCGGGAATGCCATCATTGCAGGT 327
BSNT_06224___ 310 GCTCTTATTTATATGCTTAGTATTGTCTTCTATTTTGTGATAAGCATTCA 359
|..||.||||||.|..|.|||.||.|..|||..|||.|..|.||..||||
BPUM_3707___y 328 GGGCTGATTTATTTATTCAGTTTTCTTATCTCCTTTATTGTCAGTGTTCA 377
BSNT_06224___ 360 GTTTTTGGGTATCAATATCATTGAT---------GAGGCGA-TGACACAA 399
|.||||....|||.|||||||..|| |||.||| |||
BPUM_3707___y 378 GCTTTTTCAAATCGATATCATGAATATTGCGAAAGAGTCGATTGA----- 422
BSNT_06224___ 400 TACCGGCAATCTCTTGAT----ATGGTAGA---AACTGTAGCGAAGCAGT 442
|||| .|||| |||||||| .|||.|| |||||.|
BPUM_3707___y 423 -----GCAA----ATGATGCCGATGGTAGAGAGTACTTTA---AAGCAAT 460
BSNT_06224___ 443 CGGGCAATGCTGGA---CAGTTTGAGAAGCAATTAAAACTGATGGAAGA- 488
|.|||....|||.| .||.|||..||.||..|.||||.|.|..||||
BPUM_3707___y 461 CCGGCGCGTCTGAAAAGGAGATTGCCAAACAGCTCAAACAGTTTAAAGAG 510
BSNT_06224___ 489 ---------ACA--ATT-----------GGGTATCGTTCAATATCTTTT- 515
||| ||| ..|||.|| |||||
BPUM_3707___y 511 TTGCAGGATACAGCATTAAACGCTTTACCTGTAGCG--------CTTTTG 552
BSNT_06224___ 516 -TCCAACAGCTATTGTGATGG----TAGGAGTTATTTTTTCTTTCCTCAG 560
|| ||.||||.|.|||||| |..||.|.|||..|||.|.|..|
BPUM_3707___y 553 ATC--ACTGCTACTTTGATGGCTTTTGTGAATCATTGGTTCGTGCGGC-- 598
BSNT_06224___ 561 TTACCTT-ATCGCTAAGCCGCTCTTAAGGCGATTCTCCCCCGATATTCCT 609
|||| ||| ||.|.|.|..|| .|.||.||.||
BPUM_3707___y 599 ---CCTTGATC---AAACGGTTTGTA------------TCAGACATGCC- 629
BSNT_06224___ 610 AATCTAAAGCCTTTTAGAGAGTTGAAG--TTTCCG-----CAAA------ 646
||.|.||.||| |.||.||| |||.|| ||||
BPUM_3707___y 630 -------AGTCCTTAAGA-AATTTAAGGATTTGCGGCTGCCAAAAAGCAT 671
BSNT_06224___ 647 -GTGTTGTAGTACTGTATT-----TGATTATTGTCATGCT--TTCATTTT 688
||.|.|||.|| |.||.| ||.|| ||| ||||| ||||
BPUM_3707___y 672 GGTATGGTATTA-TTTACTCACACTGCTT-TTG--ATGCTGATTCA---- 713
BSNT_06224___ 689 TGCCTTTAGAAAAAGGCCAAATGCTGTACTCTATCGCT--TTAAATGGGG 736
|.| |||||||||| .||| .|.|||.||| ||.|||.|.|
BPUM_3707___y 714 -GAC---AGAAAAAGGC----AGCT---TTTTATGGCTCGTTCAATCGAG 752
BSNT_06224___ 737 AG--------------TTTATACTCGGGTTTCTGATTTTCATCCAAGGTT 772
.| ||||||||.|.|.|| ||.||.||.|
BPUM_3707___y 753 TGCGTTTAAAATTTTATTTATACTGGTGCTT---------ATTCAGGGAT 793
BSNT_06224___ 773 TATCATTTATCTTTTTCTATTGCCATAAGAAACA---ATATCCAAAGGCT 819
|.||.||||||||.|..||||||| |.||||.| ||.||.|||
BPUM_3707___y 794 TTTCTTTTATCTTCTATTATTGCC--ACGAAAAAGGCATCTCAAAA---- 837
BSNT_06224___ 820 GCGGCTGT---GATT---GCTGTCATACTTGGGTTTGTGCATCCG---GT 860
||.|| .||| |||.||.|..|.|||.||.|..||||| ||
BPUM_3707___y 838 ---GCAGTCCCCATTTTCGCTATCGTGTTAGGGGTTCTCTATCCGCCAGT 884
BSNT_06224___ 861 CTTCATGGCGGCCATTCGCATTTTAGGCGTTTTAGATATGGGCTTTCATA 910
|....|||..| |.||.||..||||..||...||.||.||||||.||.
BPUM_3707___y 885 CGGTGTGGTTG---TGCGTATCATAGGGATTGCTGACATAGGCTTTGATT 931
BSNT_06224___ 911 TAAG-GAATAAGGTGAAGTGA--------- 930
|||| ||| ||.||||| |
BPUM_3707___y 932 TAAGAGAA-AAAGTGAA---AAACAAATAA 957
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