Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00308 and BPUM_3702
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:13
# Commandline: needle
# -asequence dna-align/BSNT_00308.1.24716.seq
# -bsequence dna-align/BPUM_3702___ybbA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00308-BPUM_3702___ybbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00308-BPUM_3702___ybbA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00308
# 2: BPUM_3702___ybbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 854
# Identity: 466/854 (54.6%)
# Similarity: 466/854 (54.6%)
# Gaps: 223/854 (26.1%)
# Score: 961.0
#
#
#=======================================
BSNT_00308 1 TTGAAAGGATCTCTTTCA------GAACACAA-AGCCGGCAACAGGAGGT 43
.|||||||..||.|||.| ||||..|| .|.|||||||..||..|
BPUM_3702___y 1 ATGAAAGGTACTTTTTTATATGAGGAACTGAACGGACGGCAACTCGATAT 50
BSNT_00308 44 TCACGCTGTACCTCCCTCCTTCCTAC-AGCACAGACAGCGGGGGATTTCC 92
| ||.|||||.|| ||.|.| |.|||...|| |.||
BPUM_3702___y 51 T-------TATCTCCCGCC-TCATTCAAACACCCTCA---------TGCC 83
BSNT_00308 93 TGCTGT--TTACGTGCAGGATGGCAGTTCTT---TGTTCCAAAACCAAAT 137
.||||| || ||.||||||| |||||| ||||.||..|.||.||
BPUM_3702___y 84 GGCTGTGATT--GTCCAGGATG---GTTCTTCCCTGTTTCATCAGCACAT 128
BSNT_00308 138 CGAATTACT-------AGA------AAGCGCCTTTCAACAGCAAAGGCTC 174
| .||.|| ||| ||| |||.||| ||.|| |.
BPUM_3702___y 129 C--CTTTCTTTAGAAGAGATGATCGAAG-GCCGTTC--CATCA-----TG 168
BSNT_00308 175 CCTGAACTCGTGCTGATCGGTA-TCGAACCCGAA--AACCGGCTTGATGA 221
|||| |.||.|||||.||.| || |||| || ||||||||.|||||
BPUM_3702___y 169 CCTG---TGGTACTGATTGGCATTC--ACCC-AATCAACCGGCTCGATGA 212
BSNT_00308 222 ATACACCCCATGGCCGGCTGCATCAC-TCAGTGATCGGTTCACGGACTTC 270
|||.||.||.|||..|||..|.||.| |||.|.||| .|||.|.|..|||
BPUM_3702___y 213 ATATACACCTTGGGAGGCACCCTCTCTTCATTCATC-CTTCCCAGCTTTC 261
BSNT_00308 271 GGCGGAATGG-------GATATCAC-TATCTGTCTGATATAACGAACCAG 312
||.|| || ||| |||||..||..|.||||..|||||
BPUM_3702___y 262 -----AAAGGTGAAGCAGA---CACGTATCTCGCTTTTTTAACTGACCAG 303
BSNT_00308 313 TTCATTCCGCTAATC--GAAGAAAACT----------------GGAACGT 344
||.||.| ||.||| |...||.||| .||.|||
BPUM_3702___y 304 TTGATGC--CTTATCTTGTTCAATACTATCCGGTTGAGCCTGATGATCGT 351
BSNT_00308 345 CACCAGGGAACCGCAGTCAAGAGGAATGATCGGTGCCTCATTAGGCGGCC 394
||.|| ||| |.|.||.||||||||.|||||.||||
BPUM_3702___y 352 CAGCA------CGC----------ACTTATTGGTGCCTCCTTAGGTGGCC 385
BSNT_00308 395 TCATCTCAATGTTCGCCATATT-----AAAATATCCGTCAATGTTCGGGA 439
|..|.||.||||..| ||..|| ||...||||.| |.||| |
BPUM_3702___y 386 TTGTGTCCATGTATG-CACTTTGGAAGAAGCAATCCTT---TTTTC---A 428
BSNT_00308 440 AAATA--GGCTCTATATCAGGTTCATACTGGTA-CGAGAACGCAGCGGAA 486
|.||| ||||||.|.||.|||||.|..||||| | |.||
BPUM_3702___y 429 ACATATCGGCTCTCTTTCCGGTTCCTTTTGGTATC-----CTCA------ 467
BSNT_00308 487 ACCATTCAT---ATATCTTCTTTAA----AGCCT--GGC---ACTGCA-C 523
.||||| .|||.|.|.|.|| |.||| ||| ||..|| |
BPUM_3702___y 468 ---CTTCATGCCTTATGTACGTCAACATCACCCTAAGGCTTTACCCCAGC 514
BSNT_00308 524 GTGTTTTCATGTCTATC----GGGAGTGAAGAAGGCTGTGAAA--AACAA 567
|..|| |.|.|||| ||.|||||.|||| |||| |..||
BPUM_3702___y 515 GCATT----TATTTATCCGTTGGCAGTGAGGAAG-----GAAAGGAGAAA 555
BSNT_00308 568 TCCAT-----TCAGCGACATATGCTGAAAAAAACAAAGCAAG---TTCAT 609
|| | |||||.|||||||.||..|...|| |.||| |.|||
BPUM_3702___y 556 TC--TTCTGCTCAGCAACATATGGTGCCATTTAC---GGAAGAGCTGCAT 600
BSNT_00308 610 CAAAGTCTAAAAGAAAAAGGCTTCACTGAAGACCAGTTGTGTCTTTCA-A 658
||.|.|||..|.|...|.||..|..|..||.||||..|..| |.|||| |
BPUM_3702___y 601 CACATTCTGCACGGTTATGGTATGCCAAAACACCAACTCCG-CCTTCATA 649
BSNT_00308 659 TTGA--AAAAGGAGCGGTGCACCACCGCA----AGT--ATTTCTGC-AAA 699
|||| |.|.||||.| ||..|| ||| |||||.|| |||
BPUM_3702___y 650 TTGAGTACAGGGAGGG-------ACATCATATCAGTCAATTTCAGCGAAA 692
BSNT_00308 700 CAGTTCATCAACGCGCTCGAATGGCTATACGGAAAAAACCGCTCAACCCT 749
| ||..||...||.|||.|.|||.|.||.|| ||||.|| |
BPUM_3702___y 693 C--TTTGTCTCTGCCCTCAAGTGGTTTTATGG-------CGCTAAA---T 730
BSNT_00308 750 ATGA 753
|.
BPUM_3702___y 731 AG-- 732
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