Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00365 and BPUM_3698
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:16
# Commandline: needle
# -asequence dna-align/BSNT_00365___ybdO.1.24716.seq
# -bsequence dna-align/BPUM_3698___ybdO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00365___ybdO-BPUM_3698___ybdO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00365___ybdO-BPUM_3698___ybdO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00365___ybdO
# 2: BPUM_3698___ybdO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1339
# Identity: 623/1339 (46.5%)
# Similarity: 623/1339 (46.5%)
# Gaps: 527/1339 (39.4%)
# Score: 1294.0
#
#
#=======================================
BSNT_00365___ 1 ATGCGTCTGAATCGGCAATTTATCCGCACTCAGCTGATGGCACAGAACAT 50
BPUM_3698___y 0 -------------------------------------------------- 0
BSNT_00365___ 51 ATTGAGCAAGAATGCGCCTGCCAAACGGGAGAATGCGACTGAAAATCCAG 100
BPUM_3698___y 0 -------------------------------------------------- 0
BSNT_00365___ 101 CGGCAGTTCTGGAAAAGGCATACAGCAGGCTTAAGTCACAATCTTCAACT 150
BPUM_3698___y 0 -------------------------------------------------- 0
BSNT_00365___ 151 GGGGGAATCAATCAGTTCAATTATTCTAAAACCAGCGTGTCGGGAAACAG 200
||.|| ||| |||.|| ||| |.|.||||
BPUM_3698___y 1 ------ATGAA----------TAT--TAATAC------GTC-GTACACAG 25
BSNT_00365___ 201 C-GGGGCGTTCAGCAAAGTGTATCAATCAG---CGAATGATCGAACAGTG 246
| ||.|| |||| |.||||||| |||||
BPUM_3698___y 26 CAGGTGC-TTCA---------AACAATCAGAACCGAAT------------ 53
BSNT_00365___ 247 ACAGAC-ACAGGGGAAG---AAACAGTGATTCAATCCCAAAACCAC-TAT 291
|||| |.| ||| ||.|||..||| ||||..|| .||
BPUM_3698___y 54 --AGACTATA----AAGGTCAATCAGCTATT-------AAAAGTACAAAT 90
BSNT_00365___ 292 GA----AT--CTGAGAG-TGATATCAGAATCAAAATACTAGATGAAAAAT 334
|| || |.|| || |||||...||||.||||||.||||||||||||
BPUM_3698___y 91 GAGGTGATGACCGA-AGCTGATAGACGAATGAAAATATTAGATGAAAAAT 139
BSNT_00365___ 335 ACAGCAGGATGAATGCGATTAAT----AAAACAAAGTCTGA-TCCATTAG 379
|| ||..|| |||||| ||||.||| .|| |||| ||
BPUM_3698___y 140 AC-----GAAAAA----ATTAATGAACAAAATAAA---CGATTCCA--AG 175
BSNT_00365___ 380 GC-----------TATATTAAGGATAAGTACCAAAATTCAAAGTCTCCTT 418
.| |||||| .||||||||.|.||||.||.|.||.||||
BPUM_3698___y 176 ACCCTCATGGTCATATATT--TGATAAGTATCGAAATCCACATTCCCCTT 223
BSNT_00365___ 419 ATTTCAGAAGTGATCTGTC--AGCTGCAGAAAGACAGGCCGCTTACGATA 466
|||..||||.||||.|..| |.| ||||||||.|.||.||||||..||
BPUM_3698___y 224 ATTATAGAAATGATTTAACCAAAC--CAGAAAGAGAAGCTGCTTACTCTA 271
BSNT_00365___ 467 ATGAAACAGAATGGTTATTCAAA----GGGA-AGGCGCAAAACTATAACC 511
..||| |.|||||...|.|| |||| ||| |....|.|||||..
BPUM_3698___y 272 TGGAA----ATTGGTTGGGCTAACCACGGGAGAGG-GGGGTATTATAATT 316
BSNT_00365___ 512 TTCAGGATGCTGTGTTTCGGAATGTCACATTTCATGG------------- 548
||.|.||.||..|.||.||.||.|..| .|.||
BPUM_3698___y 317 TTAATGACGCCATCTTCCGTAACGAAA-----AACGGTACGATCCTACCC 361
BSNT_00365___ 549 --GGAAGTGGAAGCTGAGAATGAAAAGGTGTA-TCAGCGGGGAC---AGG 592
|.|||||.| || ||.|||| .|| |||.| .||| |||
BPUM_3698___y 362 AAGAAAGTGTA----GA-AAAGAAA----TTATTCAAC--CGACAAAAGG 400
BSNT_00365___ 593 TTAACCAGCAGCTGCAAGTACTGTT------GAATCG--AAACCATATTC 634
|.|||.|.||..|.||||...|||| .|||.| .|||| ||||
BPUM_3698___y 401 TCAACGAACAATTACAAGATTTGTTCTCTAAAAATGGTATAACC--ATTC 448
BSNT_00365___ 635 ATATTCCAGAGGGGACAGAGCTG------ACGTTTACAATC-ACACCGAT 677
.|| |.| ||| || ||.|||||.||| || ||.|.
BPUM_3698___y 449 CTA----AAA----ACA----TGAATTTCACTTTTACCATCGAC-CCAAA 485
BSNT_00365___ 678 TGACT----ATCAGGTGCGGGTAAGCGGGT----CAGACGATCAGGAT-- 717
|.|.| ||.||..|.|||| ||| ||||.|| ||
BPUM_3698___y 486 TCATTTCAAATTAGTGGTGGGT-----GGTTCAACAGATGA-----ATCG 525
BSNT_00365___ 718 CTGATCAAGCAAATTGAGCAAGTGCTGCAATCTGGAGACAA-CAGCAA-- 764
||||..||.|.|||.| |||..|| || |..|.|||| ||.|||
BPUM_3698___y 526 CTGACTAAACTAATAG---AAGACCT---AT-TAAATACAAGCAACAATA 568
BSNT_00365___ 765 ----AGAACTATTTTTGCACATCATGAAAAG-CCAAAGCAGTGATTCAGC 809
||||.|||||||.||.||.|||||||| ..|||..| ||||||..|
BPUM_3698___y 569 CAAGAGAATTATTTTTCCATATTATGAAAAGTAGAAATGA-TGATTCGAC 617
BSNT_00365___ 810 ACAATTTTCCGAAGAGGCCT-ATCAAAAGTATCAGGCT--------GCTC 850
.||||| .|.|||| || |.||..||| .||.
BPUM_3698___y 618 TCAATT-------CACGCCTGAT------TCTCTTGCTAAATTCCACCTT 654
BSNT_00365___ 851 GTGAGATGTATGAA---------GTTACAGGCTACCATTTGAAGGATTTA 891
|||| ||.|| ||.|||||||||.||||.||.||.|||
BPUM_3698___y 655 GTGA-----ATCAAATCAAAACGGTGACAGGCTACAATTTAAAAGACTTA 699
BSNT_00365___ 892 GAAGTGATTG---ATGGGCGGTACGTCACGCCTGA--GGGACGTGACTTA 936
.| .|||| |.||.|..|..||.|||..|.| |||.|...|.||
BPUM_3698___y 700 AA---TATTGTAAACGGTCAATTTGTAACGGATAAAGGGGTCAATATTT- 745
BSNT_00365___ 937 ATGGATGTATATAAGGAAGAGCT--TGAAAAA--GATCCAGTGCAGAA-- 980
|.|||.||||.||.|||||.|| ||||||| .||.||..||||||
BPUM_3698___y 746 -TTGATATATACAAAGAAGATCTCCTGAAAAACCCATACACAGCAGAACA 794
BSNT_00365___ 981 ---ACAAA---CGGCTTCTTAT-----------GCTAT---ATCTTACTA 1010
||.|| |.|||||..|| ||||| ||||
BPUM_3698___y 795 TGCACGAATTGCCGCTTCACATTACGGAGCACAGCTATTTGATCT----- 839
BSNT_00365___ 1011 TCGTTCAGAGCTCAGTAAAATCGCGGAAGCCGGGTATAATGCCATTCCGG 1060
||| || |||| |||||.|.||.|.|||||.|
BPUM_3698___y 840 --------AGC-CA--AAAA----------CGGGTTTGATTCTATTCCCG 868
BSNT_00365___ 1061 ATTTCATCCTTTCAATTGATTA-CAGCAATGGATCTCTGAGAGATG---- 1105
||||..|..|.||.||||.||| || .||.||.|| |..|.|||
BPUM_3698___y 869 ATTTGGTGTTATCTATTGGTTATCA-AAACGGGTC---GTTACATGACAT 914
BSNT_00365___ 1106 TGGGACAAAGCAAG--AGCTATGGGACCGGAGATACCGGGTGGCTTGAAG 1153
|||| |||| ||| |..||| |||| |||||
BPUM_3698___y 915 TGGG-CAAA--AAGAAAATTAT------GGAG-------------TGAAG 942
BSNT_00365___ 1154 CATTAAAGCG-------TCAAACGGGTGTGAATTATTAG 1185
|||.|| .||||.| ||||
BPUM_3698___y 943 ----AAAACGGTAGAGAACAAAAG---GTGA-------- 966
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