Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06200 and BPUM_3689
See
Amino acid alignment /
Visit
BSNT_06200 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:40
# Commandline: needle
# -asequence dna-align/BSNT_06200___yycF.1.24716.seq
# -bsequence dna-align/BPUM_3689___yycF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06200___yycF-BPUM_3689___yycF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06200___yycF-BPUM_3689___yycF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06200___yycF
# 2: BPUM_3689___yycF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 725
# Identity: 560/725 (77.2%)
# Similarity: 560/725 (77.2%)
# Gaps: 31/725 ( 4.3%)
# Score: 2202.5
#
#
#=======================================
BSNT_06200___ 1 ATGATGGATAAAAAGATCCTTGTAGTAGATGATGAAAAACCGATTGCAGA 50
|||||.||||||||.|||||.||||||||||||||.||||||||.||
BPUM_3689___y 1 ---ATGGAAAAAAAGATTCTTGTCGTAGATGATGAAAAGCCGATTGCTGA 47
BSNT_06200___ 51 TATATTGGAATTTAACTTAAGAAAAGAAGGCTATGAAGTGCACTGTGCCC 100
|||||||||.|||||||||||||||||.||||||||.||.||.|||||..
BPUM_3689___y 48 TATATTGGAGTTTAACTTAAGAAAAGAGGGCTATGAGGTTCATTGTGCAT 97
BSNT_06200___ 101 ATGACGGAAACGAAGCCGTTGAAATGGTAGAAGAGCTTCAGCCTGATTTA 150
|||||||.||.||||||.||||||||||||||||..|..|.||.||..|.
BPUM_3689___y 98 ATGACGGCAATGAAGCCCTTGAAATGGTAGAAGAAATCAAACCAGACATT 147
BSNT_06200___ 151 ATTCTTTTAGATATTATGCTCCCGAATAAAGACGGCGTTGAGGTATGCCG 200
|||.|..||||.||.|||||.|||||||||||.||||||||.||||||||
BPUM_3689___y 148 ATTTTGCTAGACATCATGCTACCGAATAAAGATGGCGTTGAAGTATGCCG 197
BSNT_06200___ 201 TGAAGTCAGAAAGAAATACGATATGCCAATCATTATGCTGACGGCTAAGG 250
||||||.|||||||||||.||.|||||.||.||.||||||||.||.||.|
BPUM_3689___y 198 TGAAGTGAGAAAGAAATATGACATGCCGATTATCATGCTGACAGCAAAAG 247
BSNT_06200___ 251 ATTCAGAAATTGACAAGGTTATCGGGCTCGAAATCGGTGCTGATGACTAT 300
|.||.||||||||.||.||.|||||.||.||..|.||.||.|||||.|||
BPUM_3689___y 248 ACTCTGAAATTGATAAAGTCATCGGTCTTGAGCTTGGCGCAGATGATTAT 297
BSNT_06200___ 301 GTCACAAAACCATTCAGCACACGCGAGCT-CTTGGCGCGTGTAAAAGCG- 348
||.||.||.|||||.|||||.|||||||| ||| ||.|||||.||.|||
BPUM_3689___y 298 GTGACGAAGCCATTTAGCACGCGCGAGCTGCTT-GCCCGTGTGAAGGCGA 346
BSNT_06200___ 349 ------------AACCTGCGCCGCCAGCTGACAACAGCGCCTGCGGAGGA 386
||..|||..|||| ||.|||| |||||
BPUM_3689___y 347 ATTTAAGAAGACAAATTGCTACGCC-GCAGACA------------GAGGA 383
BSNT_06200___ 387 AGAGCCTTCCTCTAACGAGATTCATATCGGCTCTCTCGTCATCTTCCCTG 436
|||..||...||.||.||.|||.|.||.||.||.||.|||||.|..||.|
BPUM_3689___y 384 AGAATCTGAATCAAATGATATTGAAATTGGATCACTTGTCATTTATCCAG 433
BSNT_06200___ 437 ACGCGTACGTTGTATCAAAACGAGATGAAACAATCGAATTGACTCATCGT 486
|.|||||.||.||.||.||.||.||.|||||.||.||||||||.||.|||
BPUM_3689___y 434 ATGCGTATGTGGTGTCTAAGCGCGAGGAAACGATTGAATTGACGCACCGT 483
BSNT_06200___ 487 GAGTTCGAATTGCTTCATTATTTAGCAAAACATATCGGACAAGTGATGAC 536
||||||||||||||||||||.|||||.|||||||||||||||||||||||
BPUM_3689___y 484 GAGTTCGAATTGCTTCATTACTTAGCGAAACATATCGGACAAGTGATGAC 533
BSNT_06200___ 537 CCGTGAACATTTGCTTCAAACCGTTTGGGGCTATGATTACTTCGGCGATG 586
.|||||.||.|||||.||||||||.||||||||.|||||||||||.||||
BPUM_3689___y 534 ACGTGAGCACTTGCTGCAAACCGTATGGGGCTACGATTACTTCGGAGATG 583
BSNT_06200___ 587 TCAGAACGGTTGACGTAACAGTCCGCCGGCTTCGTGAAAAAATCGAGGAC 636
||.|.||.||.|||||.||.||||||||.||||||||.|||||.||.|||
BPUM_3689___y 584 TCCGTACAGTAGACGTCACCGTCCGCCGTCTTCGTGAGAAAATTGAAGAC 633
BSNT_06200___ 637 AACCCGAGCCATCCAAATTGGATCGTCACACGCCGCGGTGTAGGTTATTA 686
||.||.||.||.||.|..||||||||.|||.|.||.||.||.||.||.||
BPUM_3689___y 634 AATCCTAGTCACCCGAGCTGGATCGTGACAAGACGAGGCGTCGGCTACTA 683
BSNT_06200___ 687 CTTGAGAAACCCAGAACAGGACTAA 711
.||.|||||||||||.|||||||||
BPUM_3689___y 684 TTTAAGAAACCCAGAGCAGGACTAA 708
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.