Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06197 and BPUM_3686
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:39
# Commandline: needle
# -asequence dna-align/BSNT_06197___yycI.1.24716.seq
# -bsequence dna-align/BPUM_3686___yycI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06197___yycI-BPUM_3686___yycI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06197___yycI-BPUM_3686___yycI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06197___yycI
# 2: BPUM_3686___yycI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1014
# Identity: 540/1014 (53.3%)
# Similarity: 540/1014 (53.3%)
# Gaps: 321/1014 (31.7%)
# Score: 1293.5
#
#
#=======================================
BSNT_06197___ 1 GTGGAGTGGAATAAGACAAAATCAATCTTCATCGTTGCCTTCCTCATTTT 50
.||||||||||||||||.|||.|.|||||.|||.|.|||||.|||.||.|
BPUM_3686___y 1 ATGGAGTGGAATAAGACCAAAACGATCTTTATCCTAGCCTTTCTCGTTCT 50
BSNT_06197___ 51 AGATAT-TTTCTTAGGCTATCAGTTTTTTCAAAAATGGCAGGCTACCGGC 99
.||||| |||| ||||.|.|||.|..|||.||||| |.|.||.|
BPUM_3686___y 51 CGATATCTTTC-TAGGTTTTCAATACTTTGAAAAA-------CGATCGAC 92
BSNT_06197___ 100 AAAGAATATGAAGTCATT-------------AAAAATGATGTCGA----- 131
||| ||||| |||||.| ||
BPUM_3686___y 93 --------TGA--TCATTTTGCGATTATCGAAAAAACG-----GATACGC 127
BSNT_06197___ 132 -GCATGACATGAAGGCCGATCATATCACGTATG--AAGGCTTGAATAAG- 177
|.|.||.||||||||.||....||||..|||| || |..||.||
BPUM_3686___y 128 TGGAAGAAATGAAGGCAGACGGGATCAAATATGGCAA----TCTATCAGA 173
BSNT_06197___ 178 -GAAGCGACAGA-AGGCTATCGGATCACGGCAAATCAAAAGTCTTTCTCC 225
||||||| ||| .|||||.||.||.||.|| |.|||||
BPUM_3686___y 174 TGAAGCGA-AGATTGGCTACCGCATTACAGC---TGAAAAG--------- 210
BSNT_06197___ 226 AAGGA------GGAAATTGA-GGCGCTGAA-----GGATCAAAAGCCTTT 263
|||.| |.|||..|| |.||..||| .|||||||||.|
BPUM_3686___y 211 AAGCAATATACGAAAAAGGATGTCGACGAATTAGCTGATCAAAAGGC--- 257
BSNT_06197___ 264 G--ATGGACATGCC----------TAGTGATGATCATAAAGTAACG-AGC 300
| |.|.||||.|| .|..|||||||.| ||.||| .||
BPUM_3686___y 258 GAAAAGCACATTCCCGAAAACAGACAAAGATGATCCT---GTCACGCTGC 304
BSNT_06197___ 301 CTGAAAATGAAGTTTGCA--AATCCAATCGCCCTATCAAAGAAGGATATC 348
.|| ||||||..|| || ||.|||.|.|||.|..|.||.||.|||||
BPUM_3686___y 305 TTG-AAATGACCTT--CAATAAACCAGTGGCCTTGCCGAAAAAAGATAT- 350
BSNT_06197___ 349 GAGGAC-GATGCTCAGGCA---CTTGTTTCTTCGAA------AATTCAAG 388
||..|| |..|| |||| ||.|| ||| ..|.|.||
BPUM_3686___y 351 GAAAACAGCGGC---GGCAAACCTGGT------GAACCAGCGTTTGCTAG 391
BSNT_06197___ 389 ATGGCGAA-AAATATAAGCTTTGGAAGGTTGATAAATCGAAGAAAG--AA 435
|||| ||| ||.||||||||.||||...|||||.|| ||.|.|.| ||
BPUM_3686___y 392 ATGG-GAAGAATTATAAGCTGTGGAGTATTGATGAA--GAGGCAGGGAAA 438
BSNT_06197___ 436 ATTATTTTCTTCCAAACGTACGAAGGTCATTATATTTACCAAAAG----- 480
||..|.||.|||||||||||..||||..|.||.||||.||||.||
BPUM_3686___y 439 ATCGTCTTTTTCCAAACGTATAAAGGGAAATACATTTTCCAAGAGGGGCT 488
BSNT_06197___ 481 -------------ACC-----GACAATCCCTCTAATATGATCGGGCAAGT 512
||| .|.||||.|.||| ||||
BPUM_3686___y 489 TGATGACTCCGAAACCATCGGAAAAATCACCCTA----GATC-------- 526
BSNT_06197___ 513 GGTGCTGCACTTAAACGGTAAAAACGAGGTTGTGTCATACGACCAGACTA 562
||||.|.||||||||||||.||.||.||..|.|||.|.|
BPUM_3686___y 527 -----------TAAATGATAAAAACGAGGTCGTATCGTATCAGCAGTCGA 565
BSNT_06197___ 563 CGCT-----------------TGAGA--------CCTT---CAAGC---- 580
.|.| ||||| |||| |.|||
BPUM_3686___y 566 TGGTGACATCGATTAATGAAGTGAGAAAAGAAACCCTTGTGCCAGCGCTT 615
BSNT_06197___ 581 -AAATTCAGAAAGAAAGCTTAATTACTGAAATGGATGCGGTTGAGCTGTT 629
|||.|..|||.|| ||||..||| |.||...|||| |||||
BPUM_3686___y 616 GAAACTGTGAAGGA---CTTATATAC-GCAAAACATGC---TGAGC---- 654
BSNT_06197___ 630 GTACTATCAAAATCAATTAAAAGAATACAGCACTGTGA-------AGAGC 672
|||| |||..||.|||| |||||
BPUM_3686___y 655 -------CAAA---------------ACACGACCGTGAAAAAGGTAGAGC 682
BSNT_06197___ 673 TGTAAATTCGGCTA-TGTAGCACAATATCC-GCTGACAAGTACGCAGGTG 720
|.||||| |.|| |.|||||||| |.|| ||||.||||||||.
BPUM_3686___y 683 -------TAGGCTACTATA-CGCAATATCCAGGTG-CAAGCACGCAGGTT 723
BSNT_06197___ 721 CTGGCGCCGGTATGGAGAATTACAGTCGAGTACGA-----TAAAAAAGTG 765
.|||.|||.||||||.| |||||||...|| || |.
BPUM_3686___y 724 ATGGTGCCTGTATGGCG------AGTCGAGCTTGAGGGCGTA------TC 761
BSNT_06197___ 766 AACGGCG-----AGAAAAAGACAGTACAAGAGTATTTTACTGTGAATGC- 809
|||.| | ||||||||||||.|.||||.|||||.| |.|||||
BPUM_3686___y 762 AACTG-GTTCAAAGAAAAAGACAGAAGAAGAATATTTGA---TCAATGCC 807
BSNT_06197___ 810 -TT--TGG------------------AGAGTACGATTTTAGAT-ACAGA- 836
|| ||| ||||.| |||| |||.|
BPUM_3686___y 808 ATTGATGGCTCAACACTTGATCATATAGAGAA-------AGATGACAAAT 850
BSNT_06197___ 837 --TCAATGA----- 843
||||||.
BPUM_3686___y 851 CTTCAATGGAGTGA 864
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