Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06196 and BPUM_3685

See Amino acid alignment / Visit BSNT_06196 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:39
# Commandline: needle
#    -asequence dna-align/BSNT_06196___yycJ.1.24716.seq
#    -bsequence dna-align/BPUM_3685___yycJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06196___yycJ-BPUM_3685___yycJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06196___yycJ-BPUM_3685___yycJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06196___yycJ
# 2: BPUM_3685___yycJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 808
# Identity:     621/808 (76.9%)
# Similarity:   621/808 (76.9%)
# Gaps:          26/808 ( 3.2%)
# Score: 2324.5
# 
#
#=======================================

BSNT_06196___      1 ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTT     50
                     |||||||||||.||.||.|||||.||||||||.||||||||.||.||.||
BPUM_3685___y      1 ATGAGCTTGCAGTTCAGTGTACTAGCGAGCGGAAGTACGGGGAACGCTTT     50

BSNT_06196___     51 TTACCTTGAAACAGAGGATCACGCATTTTTAGTGGACGCCGGTTTGAGCG    100
                     |||..|.|||||||..||.||.||.|||||||||||.||.|||||.||||
BPUM_3685___y     51 TTATTTAGAAACAGGCGAGCATGCCTTTTTAGTGGATGCTGGTTTAAGCG    100

BSNT_06196___    101 GGAAAGCCATGG----ATGGGCTGATGGCG-CAGATCGGGCGTAAGCTGG    145
                     |.|||...||||    || .|||||    | ||.||||..||.||||..|
BPUM_3685___y    101 GCAAACAAATGGTCGAAT-TGCTGA----GTCAAATCGACCGCAAGCCTG    145

BSNT_06196___    146 ATGATGTAGACGGCATTTTTGTGACGCATGAGCATAGTGACCATATTAAG    195
                     |.||..|.|||||.|||||||||||.||||||||....||.||||||||.
BPUM_3685___y    146 AAGACTTGGACGGTATTTTTGTGACACATGAGCACTCAGATCATATTAAA    195

BSNT_06196___    196 GGCCTTGGTGTGGTCGCCAGAAAGTACAAGCTTCCGATCTATGCGAATGA    245
                     ||.||||||||..|.||.|||||||||||||||||..|||||||.||||.
BPUM_3685___y    196 GGACTTGGTGTCATGGCAAGAAAGTACAAGCTTCCTGTCTATGCAAATGC    245

BSNT_06196___    246 GAAGACTTGGAAAGCGATGGAGAATCAAATCGGGAAAATTGACACCGATC    295
                     |||.||.|||||.|||||||||..|||.||||||||.|||||.||.||.|
BPUM_3685___y    246 GAAAACATGGAAGGCGATGGAGTCTCATATCGGGAAGATTGATACAGAGC    295

BSNT_06196___    296 AAAAGTTTGTATTTCCGATGGAAACAGTGAAGTCGTTCGGCGGACTTGAT    345
                     ||||.||....|||...||||||||.||..|.||.||.|||||.||.|||
BPUM_3685___y    296 AAAAATTCCATTTTGATATGGAAACTGTCCAATCCTTTGGCGGTCTCGAT    345

BSNT_06196___    346 GTTGAATCATTTGGCGTTTCCCACGATGCGGCCGAGCCGATGTTTTATGT    395
                     |||||.||.||||||||.||.||.||.|||||.|||||.||||||||.||
BPUM_3685___y    346 GTTGAGTCCTTTGGCGTCTCACATGACGCGGCTGAGCCCATGTTTTACGT    395

BSNT_06196___    396 ATTCCATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATG    445
                     .|||||||||...||.||.||.||.||..|||||||.|||||.||.||||
BPUM_3685___y    396 GTTCCATTATGGAGGGCGCAAACTTGCCCTAATGACGGATACAGGCTATG    445

BSNT_06196___    446 TCAGCGACCGGATGAAAGGCATTATCCGTTCAGCGAATGTGTTTGTGTTT    495
                     |.||.|||||.|||||||||||.||.|..|||||.|||...|||||.|||
BPUM_3685___y    446 TGAGTGACCGTATGAAAGGCATCATACAGTCAGCCAATACATTTGTATTT    495

BSNT_06196___    496 GAAAGCAATCATGATGTCGGCATGCTGCAAATGGGAAGATACCCGTGGAG    545
                     ||.|||||||||||||||||.||||||||||||||.||||||||||||||
BPUM_3685___y    496 GAGAGCAATCATGATGTCGGTATGCTGCAAATGGGTAGATACCCGTGGAG    545

BSNT_06196___    546 CATTAAGCGGCGGATTTTAAGTGACGTCGGGCACGTGTCAAATGAAGATG    595
                     |||||||||..|.|||.|.||.||.|||||.||.||.|||||||||||||
BPUM_3685___y    546 CATTAAGCGCAGAATTCTGAGCGATGTCGGACATGTTTCAAATGAAGATG    595

BSNT_06196___    596 CTGC-CTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTATTTA    644
                     |.|| ||| ||||||||.|||||||||||.||||..||.||.||.|||||
BPUM_3685___y    596 CCGCTCTT-GCGATGACAGATGTCATTGGAGATGCCACCTCACGCATTTA    644

BSNT_06196___    645 CCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGT    694
                     |.||||.||||||||.||.|||||||||||||||||..|.||..|.|||.
BPUM_3685___y    645 CTTGGCTCATTTGAGTCAAGACAACAACATGAAGGATTTAGCCCGTATGG    694

BSNT_06196___    695 CTGTGCAGCAGACATTGGCTTC-----TAAAGGATTTG-TGACGGGTGA-    737
                     |.||.|||||.||    || ||     .|||||.|||| ||.|||| || 
BPUM_3685___y    695 CGGTCCAGCAAAC----GC-TCGAGATGAAAGGCTTTGTTGTCGGG-GAT    738

BSNT_06196___    738 GACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCG    787
                     |.| |||||.|||||.||.||.||.|||||.||.||.||.||||||||||
BPUM_3685___y    739 GGC-TTTGATTTATATGATACGGACCCGAAAAAAGCAACCCCGCTTTGCG    787

BSNT_06196___    788 CTGTATAA    795
                     |.||||.|
BPUM_3685___y    788 CCGTATGA    795


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06196 and BPUM_3685

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
