Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06180 and BPUM_3683
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:38
# Commandline: needle
# -asequence dna-align/BSNT_06180___yycN.1.24716.seq
# -bsequence dna-align/BPUM_3683___yycN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06180___yycN-BPUM_3683___yycN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06180___yycN-BPUM_3683___yycN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06180___yycN
# 2: BPUM_3683___yycN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 585
# Identity: 321/585 (54.9%)
# Similarity: 321/585 (54.9%)
# Gaps: 162/585 (27.7%)
# Score: 836.5
#
#
#=======================================
BSNT_06180___ 0 -------------------------------------------------- 0
BPUM_3683___y 1 ATGACCAGTTCCTTGAGGGGACTGGTTTTTTTTGCATGCTCATCATATGA 50
BSNT_06180___ 1 ----------------ATGACAAT------CA-TGCTGACCCCAATG-CA 26
|| ||.|| || |||.| |||||| ||
BPUM_3683___y 51 TGGAGAAAAGGGGGCGAT-ACGATTGGTTACACTGCAG---CCAATGTCA 96
BSNT_06180___ 27 GTCAGAAGAATTTCG--GTCTT-------ATCTCACATACACAACAAAGC 67
||||.|.|||.|| ||.|| |..|| ||||| |||
BPUM_3683___y 97 --CAGACGGATTACGATGTATTGATGGAGAAGTC-CATAC-------AGC 136
BSNT_06180___ 68 ATTACGCGGAAGAAAAGGTAAAAGCGGGAACATGGCTGCCTGAAGA---- 113
..|||||.||||||||||||...||.||.||.||| |||||
BPUM_3683___y 137 GGTACGCAGAAGAAAAGGTACGCGCAGGGACTTGG------GAAGAGGAA 180
BSNT_06180___ 114 --------TGCACA-GCTTTTGTCTAAGCAGGCGTTTACTGAT---CTGC 151
||||.| || |.|||.| |..|| |||| ||.|
BPUM_3683___y 181 GAATCACTTGCAAACGC------CGAAGAA--CAATT--TGATCGGCTCC 220
BSNT_06180___ 152 TTCC-GAGAGGGCTGGAAACACCCCATCACCATTTGTGGAGCCTCAAGCT 200
|||| || |||.||..|.|||...|||||..|..|.||||..||| .|
BPUM_3683___y 221 TTCCTGA-AGGTCTACAGACAGAGCATCATGAGCTATGGAATCTC---TT 266
BSNT_06180___ 201 GAAT---GAAAAGGATACCG-TTGGCTGGCTCTGGATACATGCTGAACCG 246
|||| |||.||| || ||||||||.|.|||.|...|..|||.||.
BPUM_3683___y 267 GAATGGAGAAGAGG----CGATTGGCTGGGTTTGGCTTTGTTATGACCCC 312
BSNT_06180___ 247 GAGCATCCGCAGCAGGAAGCGTTTATTTATGA---TTTCGGGTTATATGA 293
.|.||.||.|||.||||||..||.||||||.| |||| ||||..||
BPUM_3683___y 313 AACCACCCACAGAAGGAAGGATTCATTTATAACTTTTTC---TTATTCGA 359
BSNT_06180___ 294 ACCGTATCGGGGAAAGGGCTACGCAAAGCAAG-CATTGGCAGCATTAGAT 342
|.|||||||.|||||.||||..||||||||.| |||| |||||||||||.
BPUM_3683___y 360 AACGTATCGAGGAAAAGGCTTTGCAAAGCAGGCCATT-GCAGCATTAGAG 408
BSNT_06180___ 343 CATACGGCACGCAG-CA-TGGGAATCCGCAAGCTGTCCCTTCATGTCTTT 390
.|...|||| .|| || |.|||.|.|..||.||.||.||||||||||||
BPUM_3683___y 409 GAAGAGGCA--AAGTCATTAGGAGTGCAAAAACTTTCGCTTCATGTCTTT 456
BSNT_06180___ 391 GCTCATAATCAGACGGCGCGAAAGCTATATGAGCAAACCGGATTTCAAGA 440
||.||||||||.|..|||||....||.|||||..|.||.||||||.||||
BPUM_3683___y 457 GCACATAATCAAATTGCGCGTTCACTGTATGAAAAGACAGGATTTGAAGA 506
BSNT_06180___ 441 AACAG--ACGTAGTGATGAGCAAGAAGATTTAA-- 471
|||.| |..|| .|||||.| ||..||||.
BPUM_3683___y 507 AACTGGAATCTA--TATGAGTA--AACCTTTATGA 537
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