Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06180 and BPUM_3683

See Amino acid alignment / Visit BSNT_06180 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:38
# Commandline: needle
#    -asequence dna-align/BSNT_06180___yycN.1.24716.seq
#    -bsequence dna-align/BPUM_3683___yycN.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06180___yycN-BPUM_3683___yycN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06180___yycN-BPUM_3683___yycN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06180___yycN
# 2: BPUM_3683___yycN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 585
# Identity:     321/585 (54.9%)
# Similarity:   321/585 (54.9%)
# Gaps:         162/585 (27.7%)
# Score: 836.5
# 
#
#=======================================

BSNT_06180___      0 --------------------------------------------------      0
                                                                       
BPUM_3683___y      1 ATGACCAGTTCCTTGAGGGGACTGGTTTTTTTTGCATGCTCATCATATGA     50

BSNT_06180___      1 ----------------ATGACAAT------CA-TGCTGACCCCAATG-CA     26
                                     || ||.||      || |||.|   |||||| ||
BPUM_3683___y     51 TGGAGAAAAGGGGGCGAT-ACGATTGGTTACACTGCAG---CCAATGTCA     96

BSNT_06180___     27 GTCAGAAGAATTTCG--GTCTT-------ATCTCACATACACAACAAAGC     67
                       ||||.|.|||.||  ||.||       |..|| |||||       |||
BPUM_3683___y     97 --CAGACGGATTACGATGTATTGATGGAGAAGTC-CATAC-------AGC    136

BSNT_06180___     68 ATTACGCGGAAGAAAAGGTAAAAGCGGGAACATGGCTGCCTGAAGA----    113
                     ..|||||.||||||||||||...||.||.||.|||      |||||    
BPUM_3683___y    137 GGTACGCAGAAGAAAAGGTACGCGCAGGGACTTGG------GAAGAGGAA    180

BSNT_06180___    114 --------TGCACA-GCTTTTGTCTAAGCAGGCGTTTACTGAT---CTGC    151
                             ||||.| ||      |.|||.|  |..||  ||||   ||.|
BPUM_3683___y    181 GAATCACTTGCAAACGC------CGAAGAA--CAATT--TGATCGGCTCC    220

BSNT_06180___    152 TTCC-GAGAGGGCTGGAAACACCCCATCACCATTTGTGGAGCCTCAAGCT    200
                     |||| || |||.||..|.|||...|||||..|..|.||||..|||   .|
BPUM_3683___y    221 TTCCTGA-AGGTCTACAGACAGAGCATCATGAGCTATGGAATCTC---TT    266

BSNT_06180___    201 GAAT---GAAAAGGATACCG-TTGGCTGGCTCTGGATACATGCTGAACCG    246
                     ||||   |||.|||    || ||||||||.|.|||.|...|..|||.||.
BPUM_3683___y    267 GAATGGAGAAGAGG----CGATTGGCTGGGTTTGGCTTTGTTATGACCCC    312

BSNT_06180___    247 GAGCATCCGCAGCAGGAAGCGTTTATTTATGA---TTTCGGGTTATATGA    293
                     .|.||.||.|||.||||||..||.||||||.|   ||||   ||||..||
BPUM_3683___y    313 AACCACCCACAGAAGGAAGGATTCATTTATAACTTTTTC---TTATTCGA    359

BSNT_06180___    294 ACCGTATCGGGGAAAGGGCTACGCAAAGCAAG-CATTGGCAGCATTAGAT    342
                     |.|||||||.|||||.||||..||||||||.| |||| |||||||||||.
BPUM_3683___y    360 AACGTATCGAGGAAAAGGCTTTGCAAAGCAGGCCATT-GCAGCATTAGAG    408

BSNT_06180___    343 CATACGGCACGCAG-CA-TGGGAATCCGCAAGCTGTCCCTTCATGTCTTT    390
                     .|...||||  .|| || |.|||.|.|..||.||.||.||||||||||||
BPUM_3683___y    409 GAAGAGGCA--AAGTCATTAGGAGTGCAAAAACTTTCGCTTCATGTCTTT    456

BSNT_06180___    391 GCTCATAATCAGACGGCGCGAAAGCTATATGAGCAAACCGGATTTCAAGA    440
                     ||.||||||||.|..|||||....||.|||||..|.||.||||||.||||
BPUM_3683___y    457 GCACATAATCAAATTGCGCGTTCACTGTATGAAAAGACAGGATTTGAAGA    506

BSNT_06180___    441 AACAG--ACGTAGTGATGAGCAAGAAGATTTAA--    471
                     |||.|  |..||  .|||||.|  ||..||||.  
BPUM_3683___y    507 AACTGGAATCTA--TATGAGTA--AACCTTTATGA    537


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