Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05960 and BPUM_3668
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:31
# Commandline: needle
# -asequence dna-align/BSNT_05960___yxjI.1.24716.seq
# -bsequence dna-align/BPUM_3668___yxjI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05960___yxjI-BPUM_3668___yxjI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05960___yxjI-BPUM_3668___yxjI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05960___yxjI
# 2: BPUM_3668___yxjI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 613
# Identity: 302/613 (49.3%)
# Similarity: 302/613 (49.3%)
# Gaps: 227/613 (37.0%)
# Score: 582.0
#
#
#=======================================
BSNT_05960___ 1 ATGATCGAGTTATTTATGAAACAAAAAATGTTCTCATTTA----AAGATG 46
||||...||.|.|.||||||.||.|||.| ||||| .||..|
BPUM_3668___y 1 ATGAAACAGCTTTATATGAAGCAGAAAGT------ATTTAGCCTGAGCGG 44
BSNT_05960___ 47 CA--TTTCACATTTATGACCG----GGATGAACA--AGAAACAT-TCAAG 87
|| ||| ||.| ||||.|.|| ||||..|| |..|.
BPUM_3668___y 45 CAGGTTT----------ACGGTAAAGGATCAGCAGGAGAACGATGTGTAT 84
BSNT_05960___ 88 GTGG----AGG---------------------GGCGTTT----TTTCTCG 108
|||| ||| |.||||| |||
BPUM_3668___y 85 GTGGTCGAAGGCAGCTTTATGAAGATGCCGAAGACGTTTACCATTT---- 130
BSNT_05960___ 109 TTAGGAGACTCATTACA-AATGACAGACTCATCTGGGAAAACGCTCGTTT 157
|.|.|||| ||.|||| .||||.|||| ||
BPUM_3668___y 131 ---------TGAATACAGAACGACA----------TGAAATCGCT-GT-- 158
BSNT_05960___ 158 CCATAGA--AC-AAAAACTAATGT----CTTTATTGCCGCGCTATGAGAT 200
|| || ||||| ||||| |||| ||.||| .||.|
BPUM_3668___y 159 -----GATTACGAAAAA--AATGTTTACCTTT-TTACCG------AAGTT 194
BSNT_05960___ 201 TTCAATTGGCGGGAAAACAGTTTGT------GAGGTA---ACG---AAGA 238
||.|.| |..||||.|| |||||| ||| ||.|
BPUM_3668___y 195 TTTAGT---------AGAAGTTGGTGGTCAAGAGGTATTGACGATCAAAA 235
BSNT_05960___ 239 AAG---TAACGTTTTTCAAACCGAAATTT----GTGATTTCCGGGCTTAA 281
||| |.|||||.||.|||.|.||||.| .||| |.|||
BPUM_3668___y 236 AAGAGTTTACGTTCTTTAAAGCAAAATATTCAATTGA-TGCCG------- 277
BSNT_05960___ 282 CTGGGAAATCGATGGTG--ATTTA--TGGAGGG--ATGAA-TTCCAGCTG 324
||||| ||||| .||| |..|| |||.||| ||||| ||.|||.||
BPUM_3668___y 278 CTGGG--ATCGA-AGTGCAAGGTAACTGGTGGGATATGAATTTTCAGGTG 324
BSNT_05960___ 325 AC----GGACGGGGAAAATGTCCGGAT--GTCA-GTGAGCAAAAAGTGGC 367
| |.||||.||| || ||| |||| ||||..||..|.|||.
BPUM_3668___y 325 -CTCCAGAACGGCGAA---GT---GATTGGTCAGGTGAAGAAGGAATGGT 367
BSNT_05960___ 368 TCAGTTGGGGTGATTCCTATCA-CTTGCAGATTGCAAACGAGGGAGATG- 415
|.|.|||||||||...||||.| .||| |.|||...||.|| .||||||
BPUM_3668___y 368 TTACTTGGGGTGACAGCTATAAGGTTG-ATATTTTGAAAGA-AGAGATGG 415
BSNT_05960___ 416 ---TTCTGAT--TTGCACTGCCATCGCTATCGTGCTTGATATG-GTTTTA 459
.|.|||| ||||.| |||.|.|.|.|.||||| || ||
BPUM_3668___y 416 AGCCTGTGATGATTGCGC-----TCGTTGTTGCGATTGAT-TGTGT---- 455
BSNT_05960___ 460 TATAACGATGAAGATGA--AAGTATTTTCTAA------------------ 489
|| |||.||| |||.|...||||.
BPUM_3668___y 456 ------GA--AAGCTGATGAAGCAGCGTCTAGGTCTTCGTCGTCAGCAAC 497
BSNT_05960___ 489 ------------- 489
BPUM_3668___y 498 GACGAATTCATAA 510
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