Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05960 and BPUM_3668

See Amino acid alignment / Visit BSNT_05960 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:31
# Commandline: needle
#    -asequence dna-align/BSNT_05960___yxjI.1.24716.seq
#    -bsequence dna-align/BPUM_3668___yxjI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05960___yxjI-BPUM_3668___yxjI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05960___yxjI-BPUM_3668___yxjI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05960___yxjI
# 2: BPUM_3668___yxjI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 613
# Identity:     302/613 (49.3%)
# Similarity:   302/613 (49.3%)
# Gaps:         227/613 (37.0%)
# Score: 582.0
# 
#
#=======================================

BSNT_05960___      1 ATGATCGAGTTATTTATGAAACAAAAAATGTTCTCATTTA----AAGATG     46
                     ||||...||.|.|.||||||.||.|||.|      |||||    .||..|
BPUM_3668___y      1 ATGAAACAGCTTTATATGAAGCAGAAAGT------ATTTAGCCTGAGCGG     44

BSNT_05960___     47 CA--TTTCACATTTATGACCG----GGATGAACA--AGAAACAT-TCAAG     87
                     ||  |||          ||.|    ||||.|.||  ||||..|| |..|.
BPUM_3668___y     45 CAGGTTT----------ACGGTAAAGGATCAGCAGGAGAACGATGTGTAT     84

BSNT_05960___     88 GTGG----AGG---------------------GGCGTTT----TTTCTCG    108
                     ||||    |||                     |.|||||    |||    
BPUM_3668___y     85 GTGGTCGAAGGCAGCTTTATGAAGATGCCGAAGACGTTTACCATTT----    130

BSNT_05960___    109 TTAGGAGACTCATTACA-AATGACAGACTCATCTGGGAAAACGCTCGTTT    157
                              |.|.|||| ||.||||          .||||.|||| ||  
BPUM_3668___y    131 ---------TGAATACAGAACGACA----------TGAAATCGCT-GT--    158

BSNT_05960___    158 CCATAGA--AC-AAAAACTAATGT----CTTTATTGCCGCGCTATGAGAT    200
                          ||  || |||||  |||||    |||| ||.|||      .||.|
BPUM_3668___y    159 -----GATTACGAAAAA--AATGTTTACCTTT-TTACCG------AAGTT    194

BSNT_05960___    201 TTCAATTGGCGGGAAAACAGTTTGT------GAGGTA---ACG---AAGA    238
                     ||.|.|         |..||||.||      ||||||   |||   ||.|
BPUM_3668___y    195 TTTAGT---------AGAAGTTGGTGGTCAAGAGGTATTGACGATCAAAA    235

BSNT_05960___    239 AAG---TAACGTTTTTCAAACCGAAATTT----GTGATTTCCGGGCTTAA    281
                     |||   |.|||||.||.|||.|.||||.|    .||| |.|||       
BPUM_3668___y    236 AAGAGTTTACGTTCTTTAAAGCAAAATATTCAATTGA-TGCCG-------    277

BSNT_05960___    282 CTGGGAAATCGATGGTG--ATTTA--TGGAGGG--ATGAA-TTCCAGCTG    324
                     |||||  ||||| .|||  |..||  |||.|||  ||||| ||.|||.||
BPUM_3668___y    278 CTGGG--ATCGA-AGTGCAAGGTAACTGGTGGGATATGAATTTTCAGGTG    324

BSNT_05960___    325 AC----GGACGGGGAAAATGTCCGGAT--GTCA-GTGAGCAAAAAGTGGC    367
                      |    |.||||.|||   ||   |||  |||| ||||..||..|.|||.
BPUM_3668___y    325 -CTCCAGAACGGCGAA---GT---GATTGGTCAGGTGAAGAAGGAATGGT    367

BSNT_05960___    368 TCAGTTGGGGTGATTCCTATCA-CTTGCAGATTGCAAACGAGGGAGATG-    415
                     |.|.|||||||||...||||.| .||| |.|||...||.|| .|||||| 
BPUM_3668___y    368 TTACTTGGGGTGACAGCTATAAGGTTG-ATATTTTGAAAGA-AGAGATGG    415

BSNT_05960___    416 ---TTCTGAT--TTGCACTGCCATCGCTATCGTGCTTGATATG-GTTTTA    459
                        .|.||||  ||||.|     |||.|.|.|.|.||||| || ||    
BPUM_3668___y    416 AGCCTGTGATGATTGCGC-----TCGTTGTTGCGATTGAT-TGTGT----    455

BSNT_05960___    460 TATAACGATGAAGATGA--AAGTATTTTCTAA------------------    489
                           ||  |||.|||  |||.|...||||.                  
BPUM_3668___y    456 ------GA--AAGCTGATGAAGCAGCGTCTAGGTCTTCGTCGTCAGCAAC    497

BSNT_05960___    489 -------------    489
                                  
BPUM_3668___y    498 GACGAATTCATAA    510


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