Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00970 and BPUM_3652
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:38
# Commandline: needle
# -asequence dna-align/BSNT_00970___ydgF.1.24716.seq
# -bsequence dna-align/BPUM_3652___aapA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00970___ydgF-BPUM_3652___aapA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00970___ydgF-BPUM_3652___aapA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00970___ydgF
# 2: BPUM_3652___aapA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1526
# Identity: 886/1526 (58.1%)
# Similarity: 886/1526 (58.1%)
# Gaps: 328/1526 (21.5%)
# Score: 2273.5
#
#
#=======================================
BSNT_00970___ 1 GTGACAGACGACATGACGAAAGACAATATAAATCAGCAAACGTTGCAGAG 50
.|| || ||||.|..|||.| |||| |||
BPUM_3652___a 1 ------------TTG--GA---ACAACAAGAATTA--AAAC------GAG 25
BSNT_00970___ 51 AGGCTTGA-AAAACAGGCATATCCAGCTCATCGCCATCGGCGGAGCCATT 99
| ||.| .||||.|.|||.|.|||.|.||.||.||.||||||.|||||
BPUM_3652___a 26 A---TTTATCAAACCGCCATGTTCAGTTGATTGCAATTGGCGGAACCATT 72
BSNT_00970___ 100 GGGACAGGCTTATTTCTCGGCTCTGGCAAATCGATTCATTTTGCCGGACC 149
||.||.||..|.|||.|.||||||||.||..|.|||||.||.||.||.||
BPUM_3652___a 73 GGAACTGGGCTGTTTTTAGGCTCTGGAAAGGCCATTCAATTGGCAGGTCC 122
BSNT_00970___ 150 TTCGATTTTATTTGCTTAT---ATGATCACAGGGATT----ATTTGCTTC 192
.|||||..|.||||||||| ||..|| |||.| || |||.
BPUM_3652___a 123 ATCGATCATTTTTGCTTATTTCATTGTC----GGAATGGCGAT---CTTT 165
BSNT_00970___ 193 TTAATTATGAGATCGCTGGGTGAACTGCTGTTATCAAACTTGA---ACTA 239
||..|.|||||..|.||.||||||||.||.|||||.|| || .|||
BPUM_3652___a 166 TTCGTCATGAGGGCACTTGGTGAACTACTCTTATCGAA---GACAGGCTA 212
BSNT_00970___ 240 TCACTCTTTTGTGGACTTTGTACAAGACTACCTAGG--CGATATGGCAGC 287
|||.||.||....||..|||.|.||||||||||.|| || ||| ||
BPUM_3652___a 213 TCAGTCATTAACCGATATTGCAGAAGACTACCTTGGTCCG---TGG--GC 257
BSNT_00970___ 288 ATTTATC---ACCGGCTGGACATATTGGTTCTGCTGGATTTCCATTGCGA 334
.|.|.|| ||.||.|||||.||.|||||.|||||||||...|..||||
BPUM_3652___a 258 TTCTTTCGTGACAGGGTGGACGTACTGGTTTTGCTGGATTATGACCGCGA 307
BSNT_00970___ 335 TGGCTGATCTGACAGCAGTCGGGCTCTACACTCAATATTGGCTCCCGGGT 384
||||.|||.|||..||.|||||..|.||....||.||||||.| |
BPUM_3652___a 308 TGGCAGATGTGATTGCGGTCGGAGTGTATGTGCAGTATTGGTT------T 351
BSNT_00970___ 385 G---TGCCGCAATGGGTGCCCGGCTTAATCGCTCTAATT---------AT 422
| |.|||||||||.|.|| .|||.|.||| ||
BPUM_3652___a 352 GACATTCCGCAATGGATTCC---------TGCTATCATTTGTTTGTTAAT 392
BSNT_00970___ 423 TTTACTGA---------TTATGAACCTGGCGACAGTCAAGCTATTTGGAG 463
|||||| | ||||.| ||.||.|||||.||.||||
BPUM_3652___a 393 TTTACT-AGGGTTTAATTTATTA--------ACGGTGAAGCTTTTCGGAG 433
BSNT_00970___ 464 AATTAGAATTTTGGTTTGCTTTGATTAAAGTCATTGCCATT--------- 504
||.|.||||||||||||||..|.||||||||.|||.|.|||
BPUM_3652___a 434 AAATGGAATTTTGGTTTGCACTCATTAAAGTGATTACGATTCTCTTGCTG 483
BSNT_00970___ 505 -TTGGCGTTAATCGTCATTGGCCTTGTGATGAT----TTTCAAAGGCTTT 549
|.|||||| |..||||..|||.|.||.|| |||||||
BPUM_3652___a 484 ATCGGCGTT----GGAATTGTTCTTTTAATCATTGGGTTTCAAA------ 523
BSNT_00970___ 550 TCCACAAGCTCAGG---AGTGTCCAGCTTCACAAATCTCTGGAGCCACGG 596
||.|.| |||| .||| |...|.||.||.||.|||...|||||
BPUM_3652___a 524 --CAGATG--CAGGGCCGGTG---ACGGTAACGAACCTTTGGTCACACGG 566
BSNT_00970___ 597 AGGCCTGTTCCCGAATGGCATG-CACGGGTTT-ATCCTCTCGTTCCAGAT 644
.||.||.||||||.|||| || |||.||||| .|.||.||.|||||.||
BPUM_3652___a 567 CGGACTATTCCCGCATGG--TGTCACAGGTTTCTTACTGTCATTCCAAAT 614
BSNT_00970___ 645 GGTTGTGTTTGCTTTTGTCGGCATTGAGCTTGTCGGGCTTACAGCCGGTG 694
||||.|.|||||.|.|||.||..|.|||.|.|||||..|..|.||.|..|
BPUM_3652___a 615 GGTTATCTTTGCGTATGTGGGAGTGGAGTTGGTCGGTGTGTCCGCAGCAG 664
BSNT_00970___ 695 AAACAGAAAACCCTGAAAAAGTAATCCCTAAGGCGATCAACAATATTCCT 744
||||||..||.|||.|||||...|||||....|||||.||.||.|||||.
BPUM_3652___a 665 AAACAGCCAATCCTCAAAAAAACATCCCGTCTGCGATTAATAAAATTCCA 714
BSNT_00970___ 745 GTCCGTGTGCTGCTTTTTTATATCGGGGC---TCTTCTCGTGATTATGAG 791
.|..|..|.||..||||.|||.|.||.|| |.||.|| |.||||| |
BPUM_3652___a 715 TTAAGAATTCTATTTTTCTATGTGGGCGCCATTTTTGTC-TTATTAT--G 761
BSNT_00970___ 792 CATCTATCCTTGG---GA------TGTCATCAATCCCAGCGAAAGCCCAT 832
.|||.||||.||| || || ||||| |||||.||.|
BPUM_3652___a 762 TATCAATCCATGGACTGAGCTTAGTG-CATCA--------GAAAGTCCTT 802
BSNT_00970___ 833 TCGTACAAGTATTTGTCGCTG-TTGGCATCGTC--GGGGCTGCAAGTATT 879
|.||..||...|||| .|||| ||||.|| || |..||.||..|..|.
BPUM_3652___a 803 TTGTGAAAACCTTTG-GGCTGATTGGAAT--TCCAGTAGCAGCGGGACTC 849
BSNT_00970___ 880 ATCAACTTTGTTGTATTGACTTCCGCTGCTTCAGCATGCAACAGCGCTGT 929
||.|||||||||||.|||||.||.||.|||||.||.||.||.||||...|
BPUM_3652___a 850 ATTAACTTTGTTGTCTTGACGTCTGCGGCTTCTGCTTGTAATAGCGGCAT 899
BSNT_00970___ 930 ATTCAGTACAAGCCG--TATGGTCTATTCCCTGGCGAAAGATCACAA--- 974
.|||...||.||||| |.|.||.||.||.|.|.| ||||.||
BPUM_3652___a 900 GTTCTCGACGAGCCGGATTTTGTATAATCTCAGTC-----ATCAAAAACA 944
BSNT_00970___ 975 ---------------TG--CGCCTGAGTCAATGGCGAAACTGACTCAGC- 1006
|| |||||| |||..||.| ||
BPUM_3652___a 945 GGGCCCATCTTCCTTTGGCCGCCTG------------AACAAACAC-GCT 981
BSNT_00970___ 1007 GTAAAGTGCCTAGAAATGCTTTATTCTTTTCAGCTATCGTGATTTTAATC 1056
||| ||.||.|||||..|||||.|||||.|.||.|||.|.|...||
BPUM_3652___a 982 GTA-----CCAAGTAATGCACTATTCGTTTCAACAATTGTGGTATCGGTC 1026
BSNT_00970___ 1057 GGTGTTACGTTAAACTACATCATGCC---AGAAGGC----GTATTCACCC 1099
||||.|...||||.|.|..|.||.|| |.|||.| |||||
BPUM_3652___a 1027 GGTGCTCTTTTAAGCAAACTGATTCCGGAACAAGCCTTTGGTATT----- 1071
BSNT_00970___ 1100 TGATCACAAGTATTTCA--ACCGTATGCTTTATCTACATTTGGG------ 1141
.||||||..| ||| .||.|.||.|| ||||||||
BPUM_3652___a 1072 --GTCACAACCA--TCAGTGCCATTTGTTT------CATTTGGGTATGGA 1111
BSNT_00970___ 1142 GGATTACGGTCATCTGCCATATGAAATACCGCAAAACAAGACCTGAATT- 1190
|.||||...|.||.||||||.|||||||....||.||||..||||||.|
BPUM_3652___a 1112 GTATTATTTTAATTTGCCATTTGAAATATAAGAAGACAAAGCCTGAACTG 1161
BSNT_00970___ 1191 -----AGCGAAAACAAACAAGTTT--AAGCTTCCGCTTTATCCGTTT--- 1230
||| |.|.|.||| |||| .||| ||.|.||.|||
BPUM_3652___a 1162 CATGCAGC-------ATCTACTTTTAAAGC-ACCG-TTCACCCCTTTTGT 1202
BSNT_00970___ 1231 --ACAAATTACCTGATTCTTGCGTTCCTGGCGTTTGTTCTGGTTGTGCTG 1278
||| .|||.|||| ||||.|| ||.|||||
BPUM_3652___a 1203 GAACA------------TTTGTGTTC-------TTGTCCT--TTTTGCTG 1231
BSNT_00970___ 1279 GCA--------------CTG---GCACAGGAT---ACTCGT-----GTTT 1303
.|| ||| || |||| ||.||| |.|
BPUM_3652___a 1232 CCATTTTAGTGATCATGCTGTTTGC---GGATGCAACACGTCCGGCGCT- 1277
BSNT_00970___ 1304 CCTTATTTGTCACACCGGTTTGGTTTATTTTGCTGATT-GTGATTTAT-A 1351
|||.| |.|||||.|||||||||..||| ||.||| .|||||||| .
BPUM_3652___a 1278 -CTTGT---TAACACCAGTTTGGTTTGGTTT-CTTATTATTGATTTATGC 1322
BSNT_00970___ 1352 AAGTGAGAAAAGCGAAGCATCAATAA 1377
|||..|||||.||...||.|| ||||
BPUM_3652___a 1323 AAGAAAGAAACGCCGTGCGTC-ATAA 1347
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