Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02017 and BPUM_3641

See Amino acid alignment / Visit BSNT_02017 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:31
# Commandline: needle
#    -asequence dna-align/BSNT_02017___rapK.1.24716.seq
#    -bsequence dna-align/BPUM_3641___rapK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02017___rapK-BPUM_3641___rapK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02017___rapK-BPUM_3641___rapK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02017___rapK
# 2: BPUM_3641___rapK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1359
# Identity:     686/1359 (50.5%)
# Similarity:   686/1359 (50.5%)
# Gaps:         423/1359 (31.1%)
# Score: 1470.0
# 
#
#=======================================

BSNT_02017___      1 ATGAGTAAACTTGCTTCTGAATATGTTGCTAATTTCTTAAATGAATGGTA     50
                     |||..||...||.||.|||||.|.||.|..||....||||||||.|||..
BPUM_3641___r      1 ATGGCTATCATTTCTGCTGAACAGGTGGGGAACCGTTTAAATGATTGGCG     50

BSNT_02017___     51 TATGGCCAT---AAAACA------GCAGAATGTTGAGGC--TG----CTG     85
                     .||.||.||   .|||||      .||.|.||.|.|.||  ||    |.|
BPUM_3641___r     51 AATTGCGATTCGCAAACATGATGTACAAAGTGCTAACGCAATGTACACAG    100

BSNT_02017___     86 AAAAATATTTTAAAGAAGTCAAATCTTTATTTGATGACATGGAAGAAGAC    135
                     ||       ||||||    |||    ||..||.|.||.|||||||||.|.
BPUM_3641___r    101 AA-------TTAAAG----CAA----TTGCTTCAAGAAATGGAAGAAAAT    135

BSNT_02017___    136 CAGGAAGTATTGATGTATTACTCTCTACTTGAAGAGAGGCATAAAATGAT    185
                     |||||.|||||||..|||||.||..|.||.||||..|.|.|||||.|.||
BPUM_3641___r    136 CAGGAGGTATTGACTTATTATTCATTGCTAGAAGGCAAGTATAAACTCAT    185

BSNT_02017___    186 GATGTATCAAGTAAAAGGGACAGACTTTCCAAAGCATTCATACTTCAACA    235
                     |||.|||.||..||.|||.|.|                 |.|||..||.|
BPUM_3641___r    186 GATATATGAACGAAGAGGTAAA-----------------ACACTGAAAGA    218

BSNT_02017___    236 AAAGACATGCAAGAG--AAATT---CA--AAAAACAGATAACATGATTGA    278
                     |.||||     ||||  |.|||   ||  .||||||.|..||.|.|||||
BPUM_3641___r    219 ACAGAC-----AGAGCTAGATTGCCCATCTAAAACAAACGACTTAATTGA    263

BSNT_02017___    279 GTACTACTTCTTTT----TGTTTGAAGCGTTATACGAATCCTACAATCGA    324
                     .|||||    ||||    |.|...||||..|.||||..||.||.||..||
BPUM_3641___r    264 ATACTA----TTTTTACCTATACAAAGCCCTTTACGCTTCATATAACAGA    309

BSNT_02017___    325 AATTTTGAGAAT--GCCATAAGCTTATTTAAAATCGCAGAGAAAAAGCTA    372
                     .|.|.|  |.||  |||||..|..|.||||||||.||.||||||||.|||
BPUM_3641___r    310 GACTAT--GCATCAGCCATTGGACTGTTTAAAATTGCTGAGAAAAAACTA    357

BSNT_02017___    373 TCGATCATTCCCGATGAAATTGAAGCTGCTGAATTTTATTCTAAAGTTGC    422
                     ...|.||||||.||||||||.||||..||||||||..||.|.|||.|.| 
BPUM_3641___r    358 CAAAACATTCCGGATGAAATAGAAGTAGCTGAATTCCATACGAAAATCG-    406

BSNT_02017___    423 GTCAA---TGTACATGATGCTCCGGCAAAGTATTGTTTCATTAAATTATA    469
                       |||   |.||.|||.|.||.||.|||||..|..||||..|..|.||||
BPUM_3641___r    407 --CAAACTTATATATGCTACTTCGTCAAAGCCTAATTTCTCTTCACTATA    454

BSNT_02017___    470 TAAACAACGCACTCAACATTTATAAAGGGAATGAAAATTATAAAAGGAAG    519
                     |..|.||.||..|..|.||||..|||.|..||||....|||.||| ||||
BPUM_3641___r    455 TTCAGAATGCTGTAGATATTTTCAAAAGTCATGAGGGATATGAAA-GAAG    503

BSNT_02017___    520 TATGCAACT-GC-----CCTTATGGTTGT------CGGAACTAACTATAC    557
                           ||| ||     |||     ||||      ||...||||.||||.
BPUM_3641___r    504 ------ACTAGCGTCAGCCT-----TTGTCATCTCCGCTGCTAATTATAT    542

BSNT_02017___    558 AGATCTAGGCCAATTTGATAA-AGCTGAAGAAGCT--TATTTCCAAGCCA    604
                     .|||.|.|| |.|.||.|.|| |||.||  ||.||  |||....||||  
BPUM_3641___r    543 GGATATTGG-CGACTTCACAAGAGCAGA--AAACTACTATAAAAAAGC--    587

BSNT_02017___    605 TTAGAATTTCAAAAGAGCTTGATGA-----TAAAT-----TTTTCGAAGC    644
                          |||.||.|     |.|.|||     |||||     |||||.|   
BPUM_3641___r    588 -----ATTACACA-----TCGCTGACAGTCTAAATGATCGTTTTCTA---    624

BSNT_02017___    645 GCAAATTCAC--------CACAATTTAAGTATTAC---ATACT-CAGCAG    682
                     ||   |||||        ||.|||.|.|||||| |   ||.|| .|||.|
BPUM_3641___r    625 GC---TTCACAGCTTTTTCATAATATCAGTATT-CTGTATGCTGAAGCTG    670

BSNT_02017___    683 CAAACAGATCCCAAGACTGTCTCAACGCACTGAGAA-AAGCCATAAGAAA    731
                     .|.|   |||..||.|.|||.||.|.||.|| |||| |.||..||||..|
BPUM_3641___r    671 GAGA---ATCGAAAAAATGTATCGATGCCCT-AGAACAGGCTCTAAGTGA    716

BSNT_02017___    732 TAAAGAGT-----------GGCGA---CAATCA------GTTTAT-----    756
                     |.||.|.|           .||.|   |.||||      ||||||     
BPUM_3641___r    717 TGAAAACTACCTCTCATCATGCTATTTCCATCACACCATGTTTATGTTAG    766

BSNT_02017___    757 ----------------------------TACATTAACTCTCT-TTACAT-    776
                                                 .|||..|.|||||| ||||.| 
BPUM_3641___r    767 TCAAAGAACTTTTATCTATTGATGAAAGAACACAAGCTCTCTATTACTTC    816

BSNT_02017___    777 ------GGCTACCAA-----------AGAGTTATTCCTCATGGAT----C    805
                           |.|.|||||           ||||..||.||.|||..||    |
BPUM_3641___r    817 GAATTAGTCAACCAAAAACACGAATCAGAGAAATGCCCCATCTATACAGC    866

BSNT_02017___    806 AAAAAGATAAAGCTG----------TATATTATTAC-------------A    832
                     ||||  .|.||..||          |||||| ||||             .
BPUM_3641___r    867 AAAA--TTGAATTTGCTTTACCATCTATATT-TTACTGAGGATATGTCTC    913

BSNT_02017___    833 AAAAAGGAC------------AGGAAA-----ATT-TAACCCAGAA--AG    862
                     ||||||..|            ||||||     ||| |||  .||||  |.
BPUM_3641___r    914 AAAAAGCTCAAGCCTGTTTCGAGGAAATCAGCATTCTAA--AAGAATTAA    961

BSNT_02017___    863 AGAAT----AAAGTGTATGAGGCTAAAAT------------AAACATC--    894
                     ||.||    ||.|||.|||.|..|.||.|            ||||| |  
BPUM_3641___r    962 AGGATGCTGAAGGTGCATGTGAATTAAGTGCACTGGCTGCAAAACA-CTT   1010

BSNT_02017___    895 -----ATTTA--TGCACTTCTTCAAGATAATC------AAAACGAAACC-    930
                          |||||  |||..|||.|||||...|||      ..||.|||.|| 
BPUM_3641___r   1011 TGAAGATTTAGGTGCCATTCATCAAGCCTATCTCTTTTTGAAGGAAGCCT   1060

BSNT_02017___    931 AT----TGAGC-------------AATGTTGGAGTTACATTCATTTCCTT    963
                     ||    |||.|             ||||..|||     ||||       |
BPUM_3641___r   1061 ATCACATGAACCATCCTATATTTGAATGGAGGA-----ATTC-------T   1098

BSNT_02017___    964 CAAGAAAAGAATGACTTAGACAGTGTTCTTGAT--CTTT--CCTTGATTA   1009
                     .|.|||||.|||||.||      |.||.||.||  ||||  ||   |||.
BPUM_3641___r   1099 AATGAAAAAAATGAGTT------TATTGTTCATCGCTTTAACC---ATTG   1139

BSNT_02017___   1010 TC--TCTCAGTACTGCGAGGAGAAAGAATGTTATAAGGATGCTCTTGAAT   1057
                     ||  |.||          |||.|||.|.|||          || ||.|||
BPUM_3641___r   1140 TCGTTTTC----------GGACAAACAGTGT----------CT-TTCAAT   1168

BSNT_02017___   1058 TTTCTAAGCGAGCTATTTTAGCCGAAAAGAAAATGAGGCAGTTGGAGGGA   1107
                     |       ||       ||           ||||||              
BPUM_3641___r   1169 T-------CG-------TT-----------AAATGA--------------   1179

BSNT_02017___   1108 ATAGGATGA   1116
                              
BPUM_3641___r   1179 ---------   1179


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