Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02017 and BPUM_3641
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_02017___rapK.1.24716.seq
# -bsequence dna-align/BPUM_3641___rapK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02017___rapK-BPUM_3641___rapK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02017___rapK-BPUM_3641___rapK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02017___rapK
# 2: BPUM_3641___rapK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1359
# Identity: 686/1359 (50.5%)
# Similarity: 686/1359 (50.5%)
# Gaps: 423/1359 (31.1%)
# Score: 1470.0
#
#
#=======================================
BSNT_02017___ 1 ATGAGTAAACTTGCTTCTGAATATGTTGCTAATTTCTTAAATGAATGGTA 50
|||..||...||.||.|||||.|.||.|..||....||||||||.|||..
BPUM_3641___r 1 ATGGCTATCATTTCTGCTGAACAGGTGGGGAACCGTTTAAATGATTGGCG 50
BSNT_02017___ 51 TATGGCCAT---AAAACA------GCAGAATGTTGAGGC--TG----CTG 85
.||.||.|| .||||| .||.|.||.|.|.|| || |.|
BPUM_3641___r 51 AATTGCGATTCGCAAACATGATGTACAAAGTGCTAACGCAATGTACACAG 100
BSNT_02017___ 86 AAAAATATTTTAAAGAAGTCAAATCTTTATTTGATGACATGGAAGAAGAC 135
|| |||||| ||| ||..||.|.||.|||||||||.|.
BPUM_3641___r 101 AA-------TTAAAG----CAA----TTGCTTCAAGAAATGGAAGAAAAT 135
BSNT_02017___ 136 CAGGAAGTATTGATGTATTACTCTCTACTTGAAGAGAGGCATAAAATGAT 185
|||||.|||||||..|||||.||..|.||.||||..|.|.|||||.|.||
BPUM_3641___r 136 CAGGAGGTATTGACTTATTATTCATTGCTAGAAGGCAAGTATAAACTCAT 185
BSNT_02017___ 186 GATGTATCAAGTAAAAGGGACAGACTTTCCAAAGCATTCATACTTCAACA 235
|||.|||.||..||.|||.|.| |.|||..||.|
BPUM_3641___r 186 GATATATGAACGAAGAGGTAAA-----------------ACACTGAAAGA 218
BSNT_02017___ 236 AAAGACATGCAAGAG--AAATT---CA--AAAAACAGATAACATGATTGA 278
|.|||| |||| |.||| || .||||||.|..||.|.|||||
BPUM_3641___r 219 ACAGAC-----AGAGCTAGATTGCCCATCTAAAACAAACGACTTAATTGA 263
BSNT_02017___ 279 GTACTACTTCTTTT----TGTTTGAAGCGTTATACGAATCCTACAATCGA 324
.||||| |||| |.|...||||..|.||||..||.||.||..||
BPUM_3641___r 264 ATACTA----TTTTTACCTATACAAAGCCCTTTACGCTTCATATAACAGA 309
BSNT_02017___ 325 AATTTTGAGAAT--GCCATAAGCTTATTTAAAATCGCAGAGAAAAAGCTA 372
.|.|.| |.|| |||||..|..|.||||||||.||.||||||||.|||
BPUM_3641___r 310 GACTAT--GCATCAGCCATTGGACTGTTTAAAATTGCTGAGAAAAAACTA 357
BSNT_02017___ 373 TCGATCATTCCCGATGAAATTGAAGCTGCTGAATTTTATTCTAAAGTTGC 422
...|.||||||.||||||||.||||..||||||||..||.|.|||.|.|
BPUM_3641___r 358 CAAAACATTCCGGATGAAATAGAAGTAGCTGAATTCCATACGAAAATCG- 406
BSNT_02017___ 423 GTCAA---TGTACATGATGCTCCGGCAAAGTATTGTTTCATTAAATTATA 469
||| |.||.|||.|.||.||.|||||..|..||||..|..|.||||
BPUM_3641___r 407 --CAAACTTATATATGCTACTTCGTCAAAGCCTAATTTCTCTTCACTATA 454
BSNT_02017___ 470 TAAACAACGCACTCAACATTTATAAAGGGAATGAAAATTATAAAAGGAAG 519
|..|.||.||..|..|.||||..|||.|..||||....|||.||| ||||
BPUM_3641___r 455 TTCAGAATGCTGTAGATATTTTCAAAAGTCATGAGGGATATGAAA-GAAG 503
BSNT_02017___ 520 TATGCAACT-GC-----CCTTATGGTTGT------CGGAACTAACTATAC 557
||| || ||| |||| ||...||||.||||.
BPUM_3641___r 504 ------ACTAGCGTCAGCCT-----TTGTCATCTCCGCTGCTAATTATAT 542
BSNT_02017___ 558 AGATCTAGGCCAATTTGATAA-AGCTGAAGAAGCT--TATTTCCAAGCCA 604
.|||.|.|| |.|.||.|.|| |||.|| ||.|| |||....||||
BPUM_3641___r 543 GGATATTGG-CGACTTCACAAGAGCAGA--AAACTACTATAAAAAAGC-- 587
BSNT_02017___ 605 TTAGAATTTCAAAAGAGCTTGATGA-----TAAAT-----TTTTCGAAGC 644
|||.||.| |.|.||| ||||| |||||.|
BPUM_3641___r 588 -----ATTACACA-----TCGCTGACAGTCTAAATGATCGTTTTCTA--- 624
BSNT_02017___ 645 GCAAATTCAC--------CACAATTTAAGTATTAC---ATACT-CAGCAG 682
|| ||||| ||.|||.|.|||||| | ||.|| .|||.|
BPUM_3641___r 625 GC---TTCACAGCTTTTTCATAATATCAGTATT-CTGTATGCTGAAGCTG 670
BSNT_02017___ 683 CAAACAGATCCCAAGACTGTCTCAACGCACTGAGAA-AAGCCATAAGAAA 731
.|.| |||..||.|.|||.||.|.||.|| |||| |.||..||||..|
BPUM_3641___r 671 GAGA---ATCGAAAAAATGTATCGATGCCCT-AGAACAGGCTCTAAGTGA 716
BSNT_02017___ 732 TAAAGAGT-----------GGCGA---CAATCA------GTTTAT----- 756
|.||.|.| .||.| |.|||| ||||||
BPUM_3641___r 717 TGAAAACTACCTCTCATCATGCTATTTCCATCACACCATGTTTATGTTAG 766
BSNT_02017___ 757 ----------------------------TACATTAACTCTCT-TTACAT- 776
.|||..|.|||||| ||||.|
BPUM_3641___r 767 TCAAAGAACTTTTATCTATTGATGAAAGAACACAAGCTCTCTATTACTTC 816
BSNT_02017___ 777 ------GGCTACCAA-----------AGAGTTATTCCTCATGGAT----C 805
|.|.||||| ||||..||.||.|||..|| |
BPUM_3641___r 817 GAATTAGTCAACCAAAAACACGAATCAGAGAAATGCCCCATCTATACAGC 866
BSNT_02017___ 806 AAAAAGATAAAGCTG----------TATATTATTAC-------------A 832
|||| .|.||..|| |||||| |||| .
BPUM_3641___r 867 AAAA--TTGAATTTGCTTTACCATCTATATT-TTACTGAGGATATGTCTC 913
BSNT_02017___ 833 AAAAAGGAC------------AGGAAA-----ATT-TAACCCAGAA--AG 862
||||||..| |||||| ||| ||| .|||| |.
BPUM_3641___r 914 AAAAAGCTCAAGCCTGTTTCGAGGAAATCAGCATTCTAA--AAGAATTAA 961
BSNT_02017___ 863 AGAAT----AAAGTGTATGAGGCTAAAAT------------AAACATC-- 894
||.|| ||.|||.|||.|..|.||.| ||||| |
BPUM_3641___r 962 AGGATGCTGAAGGTGCATGTGAATTAAGTGCACTGGCTGCAAAACA-CTT 1010
BSNT_02017___ 895 -----ATTTA--TGCACTTCTTCAAGATAATC------AAAACGAAACC- 930
||||| |||..|||.|||||...||| ..||.|||.||
BPUM_3641___r 1011 TGAAGATTTAGGTGCCATTCATCAAGCCTATCTCTTTTTGAAGGAAGCCT 1060
BSNT_02017___ 931 AT----TGAGC-------------AATGTTGGAGTTACATTCATTTCCTT 963
|| |||.| ||||..||| |||| |
BPUM_3641___r 1061 ATCACATGAACCATCCTATATTTGAATGGAGGA-----ATTC-------T 1098
BSNT_02017___ 964 CAAGAAAAGAATGACTTAGACAGTGTTCTTGAT--CTTT--CCTTGATTA 1009
.|.|||||.|||||.|| |.||.||.|| |||| || |||.
BPUM_3641___r 1099 AATGAAAAAAATGAGTT------TATTGTTCATCGCTTTAACC---ATTG 1139
BSNT_02017___ 1010 TC--TCTCAGTACTGCGAGGAGAAAGAATGTTATAAGGATGCTCTTGAAT 1057
|| |.|| |||.|||.|.||| || ||.|||
BPUM_3641___r 1140 TCGTTTTC----------GGACAAACAGTGT----------CT-TTCAAT 1168
BSNT_02017___ 1058 TTTCTAAGCGAGCTATTTTAGCCGAAAAGAAAATGAGGCAGTTGGAGGGA 1107
| || || ||||||
BPUM_3641___r 1169 T-------CG-------TT-----------AAATGA-------------- 1179
BSNT_02017___ 1108 ATAGGATGA 1116
BPUM_3641___r 1179 --------- 1179
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