Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01537 and BPUM_3621
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:04
# Commandline: needle
# -asequence dna-align/BSNT_01537___yhcH.1.24716.seq
# -bsequence dna-align/BPUM_3621___yhcH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01537___yhcH-BPUM_3621___yhcH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01537___yhcH-BPUM_3621___yhcH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01537___yhcH
# 2: BPUM_3621___yhcH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1067
# Identity: 598/1067 (56.0%)
# Similarity: 598/1067 (56.0%)
# Gaps: 286/1067 (26.8%)
# Score: 1499.5
#
#
#=======================================
BSNT_01537___ 1 ATGA-AAACAGTGTTGGAATTGAAAAACGTGACTAAAAACATCAGAGGC- 48
.||| .||| ||.||.|||.||.|.||.||..|| ||||
BPUM_3621___y 1 GTGACGAAC-GTTTTAGAACTGCATAATGTATCT-----------AGGCA 38
BSNT_01537___ 49 ------CG----AACGATCATTAATGATCTCAGTTTTACGATTCGTGAAG 88
|| ||.||||.||.|.||..|.||.|||.|..|.|..|..|
BPUM_3621___y 39 TATTCACGGGAAAAAGATCGTTCAAGACTTGAGCTTTTCTGTCCAAGCGG 88
BSNT_01537___ 89 GCGAGGTATTCGGTTTTTTAGGACCAAACGGAGCGGGGAAAACGACAACC 138
||||.||.||.||.||.||||||||||||||.||.|||||||||||||||
BPUM_3621___y 89 GCGAAGTCTTTGGCTTCTTAGGACCAAACGGCGCAGGGAAAACGACAACC 138
BSNT_01537___ 139 ATCCGGATGATGGTGGGGTT------AATGA-AGCTGTCGAAAGGTGATG 181
||.||.||||||||.|||.| |||.| |.|| |||||..
BPUM_3621___y 139 ATTCGTATGATGGTCGGGCTTTCTCCAATTACATCT-------GGTGACA 181
BSNT_01537___ 182 TCCTCATT--TGCGGC--------CAATC--AATTACGAAAGAAT---AT 216
|.||.||| || ||| ||||| .||..| ||.|| ||
BPUM_3621___y 182 TTCTGATTAATG-GGCATAGTATTCAATCCTCATATC---AGCATGCCAT 227
BSNT_01537___ 217 GCCAAGGCGATTAAGCATATTGGAGCGATCGTTGAGAATCCCGAGCTGTA 266
|||||.|| ||||.||.||..||||.||.||.||..||||
BPUM_3621___y 228 -CCAAGACG----------TTGGTGCCATTATTGAAAACCCAGAAATGTA 266
BSNT_01537___ 267 TAA--ATTTTTGAGCGGATATA-AAAATCT-----------CCAG---CA 299
||| |||| |.|.|.||.| ||||||| |||| .|
BPUM_3621___y 267 TAATCATTT---AACAGCTAGACAAAATCTTGTTCACTTTGCCAGAATGA 313
BSNT_01537___ 300 ATACGCAA--GGATGGTCAAGGGTGTCACGAAGGAAAAAATTGATGAAGT 347
||..|.|| ||||| |||||.| |||||||| ||.
BPUM_3621___y 314 ATGGGAAAGTGGATG---AAGGGCG-------------AATTGATG-AGC 346
BSNT_01537___ 348 TG-TTGAACTGGTCGGTTTAACAGACAGAATCCACGACAAGGTGAAAACA 396
|| |.|||||.|||.|.|| |||| ||| ||| |||||
BPUM_3621___y 347 TGCTAGAACTAGTCAGCTT-----ACAG----CAC------GTG-AAACA 380
BSNT_01537___ 397 TA----------------TTCTCTGGGGATGAGACAGCGTCTTGGCTTGG 430
|| |||..|.||.||||..||||||.|.||..|.|
BPUM_3621___y 381 TAAGCGTGTCCGAACGTTTTCATTAGGAATGAAGCAGCGTTTAGGTATTG 430
BSNT_01537___ 431 CACAATGCCTTCTGCAC-GAT-------CCGAAAGTGCTGATTTTGGATG 472
|.||| |||| ||| ||||||.|||||||.||.||||
BPUM_3621___y 431 CGCAA--------GCACTGATACATAGACCGAAACTGCTGATATTAGATG 472
BSNT_01537___ 473 AACCGACAAACGGCCTTGATCCGGCGGGGAT---CA-GAGAAATCAGAGA 518
|.|||||.||.||.||||||||.|.|||.|| || | ||..||||
BPUM_3621___y 473 AGCCGACCAATGGACTTGATCCAGAGGGAATTCGCATG----ATACGAGA 518
BSNT_01537___ 519 TCATTTAAAGAAG--CTGACCCGAGAAAG-AGGAATGGCTGTCATCGTTT 565
|.|.|| .||||| .|| |..||.||| |||..|.|||||.||.||||
BPUM_3621___y 519 TTACTT-GAGAAGGCTTG--CAAAGGAAGAAGGGCTAGCTGTTATTGTTT 565
BSNT_01537___ 566 CAAGCCACCTGCTGTCAGAAATGGAACTGATGTGTGATCGAATTGCGATT 615
||||.||.||..||||||||||||||.||||||||||.||..||||||||
BPUM_3621___y 566 CAAGTCATCTCATGTCAGAAATGGAATTGATGTGTGACCGTTTTGCGATT 615
BSNT_01537___ 616 CTGCAAAAAGGAAAGCTGATCGATATTCAAAAT----GT-AAAAGATGAA 660
.|.||||||||.||||||||.|..|||.|..|| || .|.|||.||
BPUM_3621___y 616 ATCCAAAAAGGCAAGCTGATTGCGATTGAGGATCAGCGTGCAGAGACGA- 664
BSNT_01537___ 661 AACATTGATGAGAACGA--TA--CA--TATTTCTTCCAGGTTGAGCAGCC 704
|..||.|||| || || ||| |
BPUM_3621___y 665 -------ACCAGGACGAATTAGTCAATTAT-------------------C 688
BSNT_01537___ 705 GAATGAA-GCCGCTGCTGTT-----------------TTAAATCA---GT 733
||||||| |.||||.|||.| ..||.||| ||
BPUM_3621___y 689 GAATGAAGGTCGCTTCTGATGAACTGGAAGAAACGAAGAAACTCATTGGT 738
BSNT_01537___ 734 ACGATTTGCTGA----------GTAAGACAAATGGTGTAGAAATCAAAC- 772
| .|||||..|| ||||||.||..||.|.||.|.|.|..|
BPUM_3621___y 739 A-TATTTGAGGAAGGCACGACTGTAAGAGAAGAGGAGCAGTATTTATTCT 787
BSNT_01537___ 773 ------TGGCTAAAGACGAAGTCCCTGCGGTTATTGA------ATTGCTG 810
||||..||||..|| .|||.|..||||| |||
BPUM_3621___y 788 TCTCCTTGGCAGAAGAGAAA----ATGCCGGAATTGATTCGTCATT---- 829
BSNT_01537___ 811 GTGATGCAGCAAATCCGT--ATT--TATGAGGTCAAGGT--TATAACAAA 854
||| ||.||...|||.| ||| ||.||..||||..| .|.||||||
BPUM_3621___y 830 -TGA-GCGGCGCGTCCATTCATTTGTACGAAATCAAAATAGAAAAACAAA 877
BSNT_01537___ 855 ATCATTAGAGGACCGTTTCTTAGAAATGACAGGTGAAACAAAAGAGGAGG 904
|.|||||.||....||||||....|.|||||| |||.||||||
BPUM_3621___y 878 --CCTTAGAAGATAAGTTCTTAAGCTTAACAGGT------AAAAAGGAGG 919
BSNT_01537___ 905 TTCA---GCATGCTTAA 918
|| |.|||.
BPUM_3621___y 920 --CAGACGTATGA---- 930
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