Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01538 and BPUM_3620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:04
# Commandline: needle
# -asequence dna-align/BSNT_01538___yhcI.1.24716.seq
# -bsequence dna-align/BPUM_3620___yhcI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01538___yhcI-BPUM_3620___yhcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01538___yhcI-BPUM_3620___yhcI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01538___yhcI
# 2: BPUM_3620___yhcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1095
# Identity: 597/1095 (54.5%)
# Similarity: 597/1095 (54.5%)
# Gaps: 294/1095 (26.8%)
# Score: 1271.5
#
#
#=======================================
BSNT_01538___ 1 ATGCTTAATT----TGATTTATAATGAGTGGCTCAAAATTTTCAG---CC 43
||| ||| |.|||.|.||.||||||.|.||.| |||| .|
BPUM_3620___y 1 ATG----ATTCGCCTCATTCAAAACGAGTGGATGAAGA---TCAGTTATC 43
BSNT_01538___ 44 GTGCCGGAACATGGGTGATGATCGGAATTCTGG-----GGCTGACAATGG 88
||...||.||.|||.|.|||.|.|||.||||.| || .|||.
BPUM_3620___y 44 GTATTGGGACTTGGATTATGGTTGGACTTCTTGTTTTAGG-----TATGA 88
BSNT_01538___ 89 TTG-------GA--TTTGCATTTTTGGCGAATCATTTTTCTGCTGGTGA- 128
||| || |||||..||..|.|.|| ||..|||||
BPUM_3620___y 89 TTGCCACGTTGATCTTTGCGGTTAAGACAAA---------TGACGGTGAT 129
BSNT_01538___ 129 -----ATCAAATTCCCATTGGAA-ACAAGAACTTCAA--GCACAA-AACG 169
|||| ..|.||||||| || .||.||.||| |..||| ||.|
BPUM_3620___y 130 CAGGCATCA---GGCGATTGGAAGAC-TGAGCTGCAATCGATCAATAAAG 175
BSNT_01538___ 170 CCGAATTAAAGA---AAGAAATCAAAGAAGATCCTTCACTGAAAGATGGG 216
| ||||| |||||.|.|||||.||| ||.||.||
BPUM_3620___y 176 C------AAAGAAACAAGAATTGAAAGAGGAT----------AATATAGG 209
BSNT_01538___ 217 ----TATAA-AGA-------AACA----ATCACACTCAACGACTATCGCA 250
||||| ||| ||.| ||..|..||||.||.|||||.|
BPUM_3620___y 210 ATTTTATAAGAGATCTCTTGAAAAGGATATAGCGATCAATGAGTATCGAA 259
BSNT_01538___ 251 TCGAGCATAATATCCCTAGTGACACGG-GCTATACGGT--------ATGG 291
||.|||||.||.|.|||..|| ||| .|.||.|||| ||||
BPUM_3620___y 260 TCAAGCATGATTTGCCTCCTG---CGGATCAATTCGGTAAAAACGCATGG 306
BSNT_01538___ 292 TCTTATGT-AACGGATTCAGCAA-ACT--TTACCATC--CTTACCGGTCT 335
.||||||| || ||| ||| .|| ||..|.|| ||...||||.|
BPUM_3620___y 307 GCTTATGTGAA--GAT----CAATGCTGATTTGCTTCAGCTGGTCGGTGT 350
BSNT_01538___ 336 GTTTACTATTATCATCGCGGCCGGAATTGTCGCGAACGAATTTAATTGGG 385
||||...||||||||.||.|||..|||||||.||...||||.|||....|
BPUM_3620___y 351 GTTTGTGATTATCATTGCAGCCACAATTGTCTCGGCTGAATATAAGCATG 400
BSNT_01538___ 386 GAACGATTAAGCTATTAATGATTCGGCCGCTCAGTCGTTTTCAA------ 429
|.||.|||||..||||..|.|||||.||.| || ||||
BPUM_3620___y 401 GTACAATTAAATTATTGTTAATTCGTCCAC-CA-------TCAAGAATGA 442
BSNT_01538___ 430 --ATTTTGATGTCCAAATATATTACAGTTCTCCTGTTTGGGCTC-CTGTT 476
|||.|..|.||.|||||..||||.||||..||.|.| || ||.||
BPUM_3620___y 443 AGATTCTCTTATCTAAATACTTTACTGTTCAACTTTAT----TCTCTATT 488
BSNT_01538___ 477 GCTGTT---GATTTTATTTATCGGTTCTA--CTTTA--TTAGGGTTGATC 519
.||..| |.||||||||||| ||| .|||| |||||...|||.
BPUM_3620___y 489 TCTTATCGCGGTTTTATTTATC----CTATCATTTATCTTAGGTGCGATA 534
BSNT_01538___ 520 TTCTTCGGAACGGGTGGTGAAACC--GCCGCGAATATTCATTTAATCTAT 567
|||||.||| ..|||.| |.| .||.|.|||||....|||
BPUM_3620___y 535 TTCTTTGGA--------CTAAATCATGAC---TATGTGCATTTGGCTTAT 573
BSNT_01538___ 568 AAGGATGGCCATGTCATTGAGC------------AAAACATG-------A 598
.|..||||..|.|||||||||| .|||.||| |
BPUM_3620___y 574 CAAAATGGTGAAGTCATTGAGCGGTCTCAGTTTGCAAATATGGTCTCTTA 623
BSNT_01538___ 599 TGGGGCATTTGGCCACAACG---TATCTTT-CTGAATCCGTCTCGG---- 640
| .|||||| ||||..| |||.||| .||.|| |.||
BPUM_3620___y 624 T----TATTTGG-CACATTGTGCTATGTTTGTTGTAT-----TAGGGACA 663
BSNT_01538___ 641 CTTTAATGGTGGCGACGATGGCGTTTATGC--TGTCTGCGGTATTCAGAA 688
|||| .||.||| |.||..|.|||||.||||
BPUM_3620___y 664 CTTT-------------------CTTTTGCCATCTCAACAGTATTTAGAA 694
BSNT_01538___ 689 ------ACAGCTCTCTTGCG----GTTGGTTTTTCCATCTTCTTGTTGGT 728
.||..|||.|.||| || ||.||..|.| .|.|||||||
BPUM_3620___y 695 GTGAGGCCATTTCTATCGCGATCAGT--GTGTTAGCGT-ATGTTGTTGG- 740
BSNT_01538___ 729 TGCCGGTA-CGATTGCAACTGCATTT--AT-TGCAGCGAAATTTGACTGG 774
.|.| |.||..||| |||||| || |.|..| |||||.|||
BPUM_3620___y 741 ----AGCATCCATCACAA--GCATTTTGATGTTCTTC----TTTGATTGG 780
BSNT_01538___ 775 GCAAAGTATATATTGTTTGCTAATG-TCGACTTGACTCAGTATGTGGATG 823
||.||.||..||||||||||.|||| || || .|.||.|||.|.|..|
BPUM_3620___y 781 GCGAAATACTTATTGTTTGCCAATGATC--CT--GCACAATATTTTGCAG 826
BSNT_01538___ 824 GCACAC---CGTTAATAAAAGGGATG--ACTATGACGTTTTCTC-----T 863
.||||| |.||.||..|||..||| .|||.|| ||||| |
BPUM_3620___y 827 ACACACCTACTTTTATCGAAGACATGTCTCTAGGA----TTCTCACTAAT 872
BSNT_01538___ 864 CGTCATGCTGGCGATCTACTT----TATCATCTT--CCTGTTGCTTGCTT 907
|||| ||.|.|||||| || |||..|||| || .||||.|
BPUM_3620___y 873 CGTC---CTAGTGATCTA-TTGGGCTATTTTCTTAGCC-----ATTGCCT 913
BSNT_01538___ 908 TCGGAA---TCTTCATGAAGCGGGATATTGCAAAC-------TAA 942
| || |||||...||.||.|| |.||.|||| |||
BPUM_3620___y 914 T---AATTGTCTTCCAAAAACGAGA-AGTGAAAACAGGCAGTTAA 954
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