Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05161 and BPUM_3617
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:49
# Commandline: needle
# -asequence dna-align/BSNT_05161___lacA.1.24716.seq
# -bsequence dna-align/BPUM_3617___lacA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05161___lacA-BPUM_3617___lacA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05161___lacA-BPUM_3617___lacA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05161___lacA
# 2: BPUM_3617___lacA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2287
# Identity: 1340/2287 (58.6%)
# Similarity: 1340/2287 (58.6%)
# Gaps: 446/2287 (19.5%)
# Score: 3322.5
#
#
#=======================================
BSNT_05161___ 1 ATGTCAAAGC-TTGAAAAAACGCA--CGT---AACAGAAGCGAA---ATT 41
|||..||||| || ||.|| ||| ..||.|.|.||| .||
BPUM_3617___l 1 ATGGGAAAGCGTT------ACCCACTCGTTCACCCAAATGTGAATGGCTT 44
BSNT_05161___ 42 TATGCTCCATGGGGGAGACTACAACCCCGATCAGTGGCTGGATCGGCCCG 91
|.|| |||||.||.||.||.||.||.|||||.|||||..||..|||.|
BPUM_3617___l 45 TTTG---CATGGTGGCGATTATAATCCAGATCAATGGCTTCATATGCCGG 91
BSNT_05161___ 92 ATATTTTAGCTGACGA----TATCAAACTGATGAAGCTTTCTCA-TACGA 136
|.||..| |||||| |.|| .|.|.|||||||||.|.|| |...|
BPUM_3617___l 92 AGATCAT---TGACGAAGATTTTC-GATTAATGAAGCTTGCACACTGTCA 137
BSNT_05161___ 137 ATACGTTTTCTGTCGGCATTTTTGCATGGAGCGCACTTGAGCCGGAGGAG 186
| ||.||.||..||..||||||.|.||||||....||.|||||.||.||.
BPUM_3617___l 138 A-ACATTCTCCATCAACATTTTCGGATGGAGTAAGCTAGAGCCAGAAGAA 186
BSNT_05161___ 187 GGCGTATATCAATTTGAATGGCTGGATGATATTTTTGAGCGGATTCACAG 236
||....|||.|.||||.|||||||||||||||..|.|| |.|.||..|||
BPUM_3617___l 187 GGTCAGTATGATTTTGCATGGCTGGATGATATCATGGA-CCGCTTGGCAG 235
BSNT_05161___ 237 TATAGGCGGC-CGGGTCATATTAGCAACGCCGAGCGGAGCCCGTCCGGCC 285
.|.|||.||| |..|.|||..|.||||||||.|||||.||..|.||.||.
BPUM_3617___l 236 CACAGGGGGCACATGCCATTCTTGCAACGCCAAGCGGGGCGAGACCTGCT 285
BSNT_05161___ 286 TGGCTGTCGCAAACCTATCCGGAAGTTTTGCGCGTCAATG----CCTCCC 331
||||||||.|||||.|||||.||.||.|||||||||.|.| ||..|.
BPUM_3617___l 286 TGGCTGTCACAAACATATCCTGAGGTATTGCGCGTCGAAGCGAACCGTCA 335
BSNT_05161___ 332 GCGTCAA---ACAGCTGCACGGCGGAAGGCACAACCACTG-----CCTCA 373
|||| || ||| ||.||..| |.||.||.||.|| |||||
BPUM_3617___l 336 GCGT-AATTTACA--TGGACTTC----GCCATAATCATTGCTTTACCTCA 378
BSNT_05161___ 374 CATCTAAAGTCTACCGAGAAAAAAC-ACGGCACATCAACCGCTTATTAGC 422
| |.| |.||.||||||||||| |...||| ||||.||.||..|.||
BPUM_3617___l 379 C--CGA---TTTATCGAGAAAAAACGAATACAC-TCAATCGTTTGCTCGC 422
BSNT_05161___ 423 AGAACGATAC--GGACATCACCCGGCGCTGTTAATGTGGCACATTTCAAA 470
.|||||.||| || |||||||.||.|||.|.||||||||||||||.||
BPUM_3617___l 423 TGAACGCTACAAGG--ATCACCCAGCACTGATCATGTGGCACATTTCGAA 470
BSNT_05161___ 471 CGAATACGGGGGAGATTGCCACTGTGATCTATGCCAGCATGCTTTCCGGG 520
.||||||||.||.||.||.||.||.||.||.|||||..|.||.||.||.|
BPUM_3617___l 471 TGAATACGGCGGCGAATGTCATTGCGACCTCTGCCAAGAAGCATTTCGAG 520
BSNT_05161___ 521 AGTGGCTGAAATCGAAATATGACAACAGCCTCAAGACATTG--------A 562
.||...|||||...||.| |||| |||.|||.||| |
BPUM_3617___l 521 GGTATTTGAAAGACAAGT---ACAA-----TCATGACCTTGAAGCTTTAA 562
BSNT_05161___ 563 ACCAGGCGTGGTGGACCCCTTTTTGGAGCCATACGTTCAATGACTGGTCA 612
|||||||.||||||||....|||||||||||.||||..|.|||.||||||
BPUM_3617___l 563 ACCAGGCATGGTGGACGGGATTTTGGAGCCACACGTATAGTGATTGGTCA 612
BSNT_05161___ 613 CAAATTGAAAGCCCTTCGCCGATCGGTGA--AAATGGCTTGCATGGCCTG 660
|||||.||....|||.|.|||..|||.|| |.||| .|.||.||..||
BPUM_3617___l 613 CAAATCGAGTCACCTGCACCGCACGGAGAGCACATG--ATACACGGGATG 660
BSNT_05161___ 661 AATTTAGATTGGCGCCGGTTCGTCACCGATCAAACGATTTCGTTTTATAA 710
|||.||||.|||...||.||.|||||.|..||||||||....||||||.|
BPUM_3617___l 661 AATCTAGACTGGAAACGCTTTGTCACAGCGCAAACGATCAATTTTTATCA 710
BSNT_05161___ 711 AAATGAAATCATTCCGCTGAAAGAATTGACGCCTGATATCCCTATCACAA 760
|||||||||....||.|||...||||||||||||.|.|||||..|.||.|
BPUM_3617___l 711 AAATGAAATTGAACCTCTGCGGGAATTGACGCCTCACATCCCAGTGACTA 760
BSNT_05161___ 761 CGAATTTTATGGCTGA-TACACCGGATTTGATCCCGTATCAGGGCCTCGA 809
|.||.|||||||..|| ||| |||.||.||...||.|.||..||.||.||
BPUM_3617___l 761 CCAACTTTATGGGCGACTAC-CCGCATATGCGACCATTTCTTGGACTGGA 809
BSNT_05161___ 810 CTA-CAGCAAATTTG-CAAAGCATGTCGATGTCA--TCAGCTGGGA-CGC 854
.|| ||.| |||||| ||||| |.|||||.||.| ||| ||||| .||
BPUM_3617___l 810 TTATCATC-AATTTGCCAAAG-AAGTCGACGTGATTTCA--TGGGATAGC 855
BSNT_05161___ 855 TTATCCTGTCTGGCACAATGACTGGGAAAGCACAGCTGATTTGGCGATGA 904
||.||.|..|||||.|..|.|.||||||..||.|||||.||||||...|
BPUM_3617___l 856 -TACCCAGCATGGCATAGCGGCAGGGAAACAACGGCTGAATTGGCGTCAA 904
BSNT_05161___ 905 AGGTCGGCTTTATCAATGATCTGTACCGAAGCTTGAAGCA---GCAGCC- 950
|.||.|.|||..|..|.||..|.||.||....||.|||.| .|||||
BPUM_3617___l 905 ACGTTGCCTTCGTTCACGACTTATATCGTTCATTAAAGGACGGTCAGCCA 954
BSNT_05161___ 951 TTTCTTATTAATGGAGTGTACGCCAAGCGCGGTCAATTGGCATAACGTCA 1000
|||| |..|.||||||.||||.||.|||...||.||.||||||.|.||.|
BPUM_3617___l 955 TTTC-TCGTGATGGAGAGTACACCGAGCCTTGTGAACTGGCATGAAGTGA 1003
BSNT_05161___ 1001 ACAAGG-CAAAGCGCCCGGGCATG---AATC-TGCTGTCATCCATGCAAA 1045
|.|||| |||| |.|...|||||| .||| |.|||..||.||.||
BPUM_3617___l 1004 ATAAGGTCAAA-CACAAAGGCATGGCACATCTTTCTGCTATACAGGC--- 1049
BSNT_05161___ 1046 TGATTGCCCACGGCTCGGACAGCGTTCTCTATTTCCAATACCGCAAATCA 1095
||||||||||||.||.|||..|||.||.||.|||||.|..|||.||...
BPUM_3617___l 1050 -GATTGCCCACGGATCAGACTCCGTGCTTTACTTCCAGTGGCGCCAAGGG 1098
BSNT_05161___ 1096 CGAGGGTCATCAGAAAAATTACACGGAGCGGTTGTGGATCAT----GACA 1141
||.||..||||.||.|||||.||.||.|||||.||.|||||| |||
BPUM_3617___l 1099 CGCGGTGCATCTGAGAAATTCCATGGTGCGGTAGTTGATCATTCTGGAC- 1147
BSNT_05161___ 1142 ATAGCCCGAAGAAC-----CGCGTCTTTCAAGAAGTGGCCAAGGTAGGCG 1186
|.|||| |||||.||||||||.||.||..|..|||| |
BPUM_3617___l 1148 --------ATGAACATACGCGCGTGTTTCAAGAGGTCGCTGATCTAGG-G 1188
BSNT_05161___ 1187 AGAC-ATTGGAACGGCTGTCCGAAGTTGTCGGAACGAAGAGGA---CGGC 1232
|.|| |.||||.| .||.|.|| |..|.||.|| ||| |.|.
BPUM_3617___l 1189 AAACAACTGGAGC----ATCTGCAG----CCCATCGCAG-GGACTTCCGT 1229
BSNT_05161___ 1233 TCAAAC------CGCGATTTTATATGACTGGGAAAATCATTGGGCGCTCG 1276
||||.| |||.||..||||.||.||||||||.||.|||||..|.|
BPUM_3617___l 1230 TCAACCAGAAGTCGCCATCATATACGATTGGGAAAACCACTGGGCCATTG 1279
BSNT_05161___ 1277 AGGATGCTCAGGGGTTTGCGAAGGCGACAAAACGTTATCCGCAAACGCT- 1325
|.|||||.||.||.||....||..|.|..|||||.|| ||.|.|.|||
BPUM_3617___l 1280 ATGATGCACAAGGCTTAAATAATACAAACAAACGCTA--CGTAGAGGCTT 1327
BSNT_05161___ 1326 -TCAGCAGCATTACCGCACATTCTGGGAACACGATATCCCTGTCGAC--- 1371
|||....||.||.||.|..||.|||.||.|.|..||||||||.|||
BPUM_3617___l 1328 GTCAAACTCACTATCGAAGCTTTTGGAAAAAAGGCATCCCTGTTGACATT 1377
BSNT_05161___ 1372 GTCATCACGAAAGAACAAGACTTTTCACCATATAAACTGCTGATCGTCCC 1421
|||..||.| |||.|.||.||.||..|.|||....||||.||.|..||
BPUM_3617___l 1378 GTCGGCATG---GAAAAGGATTTCTCGTCCTATCGTGTGCTCATTGGTCC 1424
BSNT_05161___ 1422 GATGCTGTATTTAATC-AGCGAGGACACCATTTCCCGTT----------T 1460
.|||||.||..|.||| |.|.||| |||| |
BPUM_3617___l 1425 AATGCTTTACATGATCAAACCAGG-----------CGTTGCAGAAAAAAT 1463
BSNT_05161___ 1461 AAAAGCGTTT------ACGGCTGATGGCGGCACCTTAGTCATGACGTATA 1504
..||||.||| ||| |||||.|..||..||...||.|||.
BPUM_3617___l 1464 CGAAGCCTTTGTTAAAACG------GGCGGTATTTTTATCGCAACCTATT 1507
BSNT_05161___ 1505 TCAGCGGGGTTGTGAATGAGCATGAC-----TTAACATACACAGGCGGAT 1549
..|||||..|.||..|.||..||||| || |.|.| |||||.|
BPUM_3617___l 1508 GGAGCGGTATGGTCGACGAAAATGACCTCTGTT----TCCTC-GGCGGTT 1552
BSNT_05161___ 1550 GGCAT-CCGGATCTTC-AAGCTAT---------ATTTGG-----AG---- 1579
| ||||.||.|| ..||.|| |||||| ||
BPUM_3617___l 1553 ----TCCCGGGTCCTCTCCGCCATGTACTTGGCATTTGGGCGGAAGAAAT 1598
BSNT_05161___ 1580 -------TTGA-GCCTCTTGAAACGGACACCCTGTAT------CCGAAGG 1615
|||| |||...|||| |.||||| ||..|||
BPUM_3617___l 1599 CAACACATTGATGCCAGATGAA--------CATGTATTAATGACCACAGG 1640
BSNT_05161___ 1616 ATCGAA---ACGCTGTCAGCTACC-------GCA-----GCCAA---ATA 1647
| || ||| ||.||||| ||| ||.|| |||
BPUM_3617___l 1641 A---AATGGACG----CACCTACCATGTCGGGCAATATTGCGAATCCATA 1683
BSNT_05161___ 1648 TA---TGAAATGAAGGATTATGCAACCGTGATTGATGTAAAGACAGCTTC 1694
.| |||||.| ||..|.| |||.|.|.||..||.
BPUM_3617___l 1684 CATCCTGAAACG---------GCCTCTG-------TGTTAGGGCATTTTG 1717
BSNT_05161___ 1695 AG--TGGAAGCGGTGTATCAAGAAGATTTTTATGCGCGCACGCCAGCGGT 1742
|| ||||.|| ||..|||.|.| |||||| |
BPUM_3617___l 1718 AGAATGGATGC----TACGAAGGACA---------------GCCAGC--T 1746
BSNT_05161___ 1743 CACAAGCCATGA--GTATCA-------GCAG--GGCAAGGCGTATTTTAT 1781
| ||| || ||| |.|| ||.|||||.||.|.|||
BPUM_3617___l 1747 C--------TGACTGT-TCATTCTTTTGGAGATGGAAAGGCATACTATAT 1787
BSNT_05161___ 1782 CGGCGCGCGTTTGG---AGGATCAA---TTTCAGCGTGATTTCTATGAGG 1825
||| ||..| |.||.||| |||.|...|||.||.||.||||
BPUM_3617___l 1788 -GGC-----TTCCGAAAATGAGCAAATTTTTTATGATGAGTTTTACGAGG 1831
BSNT_05161___ 1826 GTCTGATC--------------ACAGACCTGTCTCTTTCTCCAGTTTTTC 1861
.|||.||| |||| ||.||| ||.||..|.|...|||
BPUM_3617___l 1832 ATCTCATCGTAGGAATGGATATACAG-CCCGTC-CTATCAGCGGAGATTC 1879
BSNT_05161___ 1862 CGGTTCGGCACGGAAAAGGCGTC----TCCGTACAAGCGAGGCAGGAT-- 1905
| |.|.||.||| ||| |.||.||| .|| |||
BPUM_3617___l 1880 C------------AGAGGGAGTCAGTGTCC--AAAAACGA-ACA-GATGG 1913
BSNT_05161___ 1906 ----CAGGACAATGATTATATTTTTATCATGAATTTCACGGAAGAAAAAC 1951
|||||| |||.|.|||||.||||||||.||||||.||.|||
BPUM_3617___l 1914 GTCACAGGAC------TATGTGTTTATGATGAATTTTACGGAAAAACAAC 1957
BSNT_05161___ 1952 AGCTGGTCACGTTTGATCAGAGTGTGAAG-GA-----CATAA-----TGA 1990
|||| |.|||.|..|||.|..|||| || ||.|| |||
BPUM_3617___l 1958 AGCT-----CCTTTCACTAGATTCAGAAGAGAGCTATCAAAATATGCTGA 2002
BSNT_05161___ 1991 CAGGAGACATAT-TG--TCAGGCG-----------ACCTGACGATGGAAA 2026
|||| |..|||| || |||.|.| .|||.|||| |.|.|
BPUM_3617___l 2003 CAGG-GCAATATGTGCCTCAAGAGCTCCAGCTTGATCCTTACGA-GTACA 2050
BSNT_05161___ 2027 --AGTATGAAGTGAGAATTGTCGTAAACACACATTAG 2061
|.|||||| |.|||.|
BPUM_3617___l 2051 TGATTATGAA---AAAATAG----------------- 2067
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