Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05160 and BPUM_3616
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:48
# Commandline: needle
# -asequence dna-align/BSNT_05160___yvfO.1.24716.seq
# -bsequence dna-align/BPUM_3616___yvfO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05160___yvfO-BPUM_3616___yvfO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05160___yvfO-BPUM_3616___yvfO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05160___yvfO
# 2: BPUM_3616___yvfO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1544
# Identity: 736/1544 (47.7%)
# Similarity: 736/1544 (47.7%)
# Gaps: 589/1544 (38.1%)
# Score: 1543.5
#
#
#=======================================
BSNT_05160___ 1 ATGAAAAGCAAAGTGAAATTGTTCTTTG---CGGCTGCCATCGT------ 41
||||| |||||.|.|..||| |||.|| ||||
BPUM_3616___y 1 ATGAA---------GAAATGGATGCTTGTGACGGTTG---TCGTTTTCTT 38
BSNT_05160___ 42 ----GTGGAGTGCATGTAG----TTCAAC---AGGATATGCCGCTGCCAT 80
.|||.|| ||| ||.|.| ||.|.|.||.|.||||||
BPUM_3616___y 39 TTTAATGGGGT-----TAGGAATTTTACCTGAAGCAAAAGCGGATGCCAT 83
BSNT_05160___ 81 TGAGAAGGAGAAGCACGTGTCAAAGCTTCGGGCAGAGGATCTTTTTGTTA 130
| ||| .|||.|.|| |||
BPUM_3616___y 84 T------------------TCA---GTTCAGCCA----ATC--------- 99
BSNT_05160___ 131 AAAAAGTAGAGGGGA-TGAACAAG--GATTTTATCAAAGGGGCAGATGTG 177
|..||| || |||| |||||.|..|||||.||||||.|.
BPUM_3616___y 100 ---------AATGGACTG--CAAGGTGATTTCACTAAAGGAGCAGATATC 138
BSNT_05160___ 178 TCCAGCGTTATTGCTT-------TGGAAAACAGCGGTGTCA---CCTTTT 217
|||| ||||| ||||.|..|||||.|.|| .|||..
BPUM_3616___y 139 TCCA-------TGCTTGCGGAAGTGGAGAGAAGCGGCGGCAGATACTTCG 181
BSNT_05160___ 218 AC---AATACAAGCGGAAAAC--GTCAGGA-CATCTTTACAACC--TTA- 258
|| ||| ||||||| || ||| |..|| |||.| |||
BPUM_3616___y 182 ACCAGAAT------GGAAAACAGGT--GGACCCGCT---CAAGCTATTAA 220
BSNT_05160___ 259 ---AAACAGGCTGGGGTCAACTATGTTCGCGTCCGCATCTGGAATCACCC 305
|||.|||| |||||||||||.|||.|..|..|.|||||.||.||
BPUM_3616___y 221 AGGAAAAAGGC----GTCAACTATGTGCGCATTAGACTGTGGAACCATCC 266
BSNT_05160___ 306 GTATGATTCAAATGGCAACGGGT----------ATGGCGGGGGAAAC-AA 344
.||.|| ||| .||| ||| |||||||| || ||
BPUM_3616___y 267 ATACGA--CAA---CCAA--GGTCGTGCCTATAATGGCGGG----ACAAA 305
BSNT_05160___ 345 TGATGTTCAAAAAGCCATCG--AAATCGGAAAAAGAGCGACAGCGAACGG 392
||||.||.|.|.|||||||| ..||| ||||.|.||.|.||| ||..
BPUM_3616___y 306 TGATCTTAATACAGCCATCGCTTTATC--AAAACGCGCAAAAGC--ACAA 351
BSNT_05160___ 393 A--ATGAAGGTGCTGGCCGACTTTCACTACTCTGATTTCTGGGCCGATCC 440
| |||||.||.|||...||.|||||.|||..||||||||||.|||||||
BPUM_3616___y 352 AATATGAAAGTACTGCTTGATTTTCATTACAGTGATTTCTGGACCGATCC 401
BSNT_05160___ 441 AGCGAAACA----AAAGGTGCCCAAAGCCTGGGCGAATCTCAGCTTTGAA 486
.|..||||| ||| ||.|||||.||||| |||| ||||
BPUM_3616___y 402 TGGTAAACAGTTCAAA----CCAAAAGCTTGGGC--ATCT---CTTT--- 439
BSNT_05160___ 487 GCAAAAAA------AGCAAA--------GCTCT----------ATGAGTA 512
||.|||| ||.||| ||.|| || |||
BPUM_3616___y 440 -CACAAAACGATTTAGTAAAAGCGGTTGGCACTTACACAGGGGAT--GTA 486
BSNT_05160___ 513 TACGAAAC----AAAGCCTGCAAAA---GATGATCAAGGAAGGCTTTGAC 555
..|.|||| |||||| ||||| |.||...||
BPUM_3616___y 487 CTCAAAACGATGAAAGCC--CAAAATGCGCTGCCGAA------------- 521
BSNT_05160___ 556 ATCGGCATGGTTCAGGTCGGAAATGA----AAC----------------- 584
||||||.||||||||.||||| |||
BPUM_3616___y 522 -----CATGGTACAGGTCGGGAATGAATTGAACTCAGGCATGTTGTGGCC 566
BSNT_05160___ 585 -AAC-----------------AGGAGGATTTGCCGGTGAGACTGATTGGA 616
||| |||.|| |||||| |||.||
BPUM_3616___y 567 GAACGGCAAAAGCTGGGGTGAAGGCGG------CGGTGA-----ATTTGA 605
BSNT_05160___ 617 ------CGAAGATGTGCCAATTATTTAATGAAGGAAGCCGAGCGGTCAGG 660
||..|.|.|||.| |||.|| |||
BPUM_3616___y 606 CCGGCTCGCCGCTTTGCTA---------------AAGGCG---GGT---- 633
BSNT_05160___ 661 GAGACAA------------------ATTCAAATAT-----------TTTG 681
|||| |||||||||| |
BPUM_3616___y 634 ---ACAAATGCTGTCCGTTCTGTCGATTCAAATATCAACATCATGCT--- 677
BSNT_05160___ 682 GTCGCCCTGCATTTTACCAATCCTG-------AAACG---------GCTG 715
||.||.||| ||.|| .|||| ||||
BPUM_3616___y 678 -TCACCTTGC----------TCATGGTGGGGACAACGGAGCCTCCCGCTG 716
BSNT_05160___ 716 GAAGGTATTCATTTATTGCAGAAACACTCAGCAAAAACAAAGTG------ 759
| .||| |||..|||| |||.||||| .|.|||
BPUM_3616___y 717 G-TGGT---------TTGATGAAA---TCACCAAAA--GAGGTGTCTCAT 751
BSNT_05160___ 760 --GATTATGATGTGTTTGCTAGCTCCTATTATCCTTTCTGGCATGGCACA 807
|| ||.|||..|||| .||.||.||.||.|..|||.|.||
BPUM_3616___y 752 TCGA-TACGATCGGTTT-----ATCTTACTACCCGTATTGGGACGG---- 791
BSNT_05160___ 808 TTACAAAATTTGAC-CTCTGTGCTGAAGGCTGTTGCCAATACGTACGGCA 856
|..|||||.| .||| |.||.| |||||.|.|.|.||
BPUM_3616___y 792 ----AGGATTTGGCGGTCT-TACTAA----------CAATATGAATGACA 826
BSNT_05160___ 857 ---------------AAAAA---GTCATGGTGGCGGAGACATCGTACACC 888
||||| |||||.||||..||.||..|.|||...
BPUM_3616___y 827 TTAGCGCCCGCTATCAAAAAGACGTCATCGTGGTAGAAACTGCCTACGGT 876
BSNT_05160___ 889 TATACCGCTGAGGATGGCGATGGGCA---TGGAAA-------TACAGCAC 928
|.|||..|.|...||||.|| || |.|||| || |.
BPUM_3616___y 877 TTTACAACAGCAAATGGTGA----CAACCTAGAAAACTCATTTA----AT 918
BSNT_05160___ 929 CAAAAAGCGGGC-AGAC-GCTGCCATATCCAATTTCTGTTCAAGGCCAGG 976
|||.|..|.|.| |.|| ||||.| ||.|||..|||....||||||||||
BPUM_3616___y 919 CAAGATTCAGTCAATACTGCTGGC-TACCCAGCTTCACCACAAGGCCAGG 967
BSNT_05160___ 977 CAACTGCAGTAAGAGATGTA----------------ATGGAGGCAGTGGC 1010
||.||....||.|||||.|| | ||||..
BPUM_3616___y 968 CATCTTTTATACGAGATCTATCAGAAAAAATTTCACA-------AGTGAA 1010
BSNT_05160___ 1011 GAATA----CGGGCAAAGCAGGACTTGGTGTT-TTCTACTGGGAGCCGGC 1055
.||.| ||||.| |||| || ||.||.|||||.|||..
BPUM_3616___y 1011 AAACAATCGCGGGAA----AGGA-------TTCTTTTATTGGGAACCGCT 1049
BSNT_05160___ 1056 GTGGATTCCAGTCGGGCCGAA----GACACAGATAGAGAAAAACAAAGTG 1101
.|||||||||| |||| |.|.| |||
BPUM_3616___y 1050 TTGGATTCCAG------CGAAAGGCGCCCC-----------------GTG 1076
BSNT_05160___ 1102 TTATGGGAAACATACGGGTCAGGGTGGGCGTCCAGC---TATGCTGCTGA 1148
.| |..||||...|||| |.||| |||.|
BPUM_3616___y 1077 GT------------CAAGTCAATTTGGG---CTAGCTTATATTC------ 1105
BSNT_05160___ 1149 ATACGACCCTGAAGACGCCGGGAAGTGGTA-TGGGGGAAGTGCTGTAGAT 1197
|.|||||| |||| .|..||||.||||...||.
BPUM_3616___y 1106 AAACGACC------------------GGTACAGTCGGAAATGCTTGGGAA 1137
BSNT_05160___ 1198 AATCAAGCTTTATTTGATTTTAATGGACACCCGCTGCCTTCTTTGCAGGT 1247
|||||.||..|.||||||||.||.|||.|..|.||||||||..| ||.|
BPUM_3616___y 1138 AATCAGGCGATGTTTGATTTCAACGGAAAAGCACTGCCTTCACT--AGAT 1185
BSNT_05160___ 1248 GT-TTCAATATGCGGAGTCAGGACATATTCCAAAGAAACGCTGA 1290
|| ||.|| |||.||..||..|.||
BPUM_3616___y 1186 GTATTTAA--------------ACAAATGACACCGTAA------ 1209
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