Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05162 and BPUM_3615

See Amino acid alignment / Visit BSNT_05162 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:49
# Commandline: needle
#    -asequence dna-align/BSNT_05162___yvfM.1.24716.seq
#    -bsequence dna-align/BPUM_3615___yvfM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05162___yvfM-BPUM_3615___yvfM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05162___yvfM-BPUM_3615___yvfM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05162___yvfM
# 2: BPUM_3615___yvfM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 890
# Identity:     582/890 (65.4%)
# Similarity:   582/890 (65.4%)
# Gaps:          85/890 ( 9.6%)
# Score: 1649.0
# 
#
#=======================================

BSNT_05162___      1 ATGCTGGCAGATATGAAGG-TCAGAAAATATATCCGTCTCCTT-TTC---     45
                                 |||  || ||  ||||.|.|.|...|||.|| .||   
BPUM_3615___y      1 ------------ATG--GGATC--AAAACAAAACAAGCTCATTCGTCTGA     34

BSNT_05162___     46 -TCTTACTTGTTGCTAGCC--TTTATGGCGGTCAT---CATTGTTTATCC     89
                      |.||||||.|| .||.||  |||||.||...|||   .|||.|.|||||
BPUM_3615___y     35 GTATTACTTATT-TTATCCTTTTTATTGCCTCCATTTGTATTCTATATCC     83

BSNT_05162___     90 TCTCCTTTGGACGGCAGGCGCAAGCTTTAATCCCGGCAACAGCTTAATCA    139
                     .||.||||||||....||.||....||||||||.||.||||||.|.||.|
BPUM_3615___y     84 ACTGCTTTGGACAATTGGTGCTTCTTTTAATCCTGGGAACAGCCTCATGA    133

BSNT_05162___    140 GTACATCCATCATTCCGAAGCATCCGACATTCGACCATTACAAAGAATTA    189
                     |||||..|||..|||||||..||||.||.|||..|||.|.||..||..|.
BPUM_3615___y    134 GTACAAGCATGTTTCCGAAAAATCCAACGTTCAGCCACTTCACCGAGCTG    183

BSNT_05162___    190 TT-TGCGGGCAAGGAAAGC-CTTCAATATGTGCAGTGGTATGTCAACTCT    237
                     || |.|||.||.||  .|| |||   ||||...|.||||||...|||||.
BPUM_3615___y    184 TTCTTCGGTCAGGG--GGCACTT---TATGCAAAATGGTATTGGAACTCC    228

BSNT_05162___    238 ATGAAGATCAGCCTGTT--TACAATGGCAGGGTCTTTGCTCTG-----TG    280
                     |||||||||||  |.||  .|||||     |.|.||..|.|||     ||
BPUM_3615___y    229 ATGAAGATCAG--TATTGCCACAAT-----GCTATTAACACTGATTCTTG    271

BSNT_05162___    281 TGACGTTTACGGCCTATGCGTTTTCGCGCTTTCGGTTTAAAGGGAGGAAA    330
                     |.|..|||||.|.||||||.|||||..|.||.||.||.|||||..|||||
BPUM_3615___y    272 TTAGTTTTACAGGCTATGCCTTTTCTAGATTCCGTTTCAAAGGACGGAAA    321

BSNT_05162___    331 TACGCTTTAACGCTCTTTTTATTGCTCCAGATGATTCCTCAGTTTTCAGC    380
                     .|.|...|.|.|||||||||..||||.||.|||||||||||.||||||||
BPUM_3615___y    322 AATGGGCTGATGCTCTTTTTGCTGCTGCAAATGATTCCTCAATTTTCAGC    371

BSNT_05162___    381 TTTAATTGCCTTGTTTGTGCTGGCGCAAAT-CTTGGGAATGATCAATAGC    429
                     ..|.|||||..|.||.||..||||.||||| ||| |||.|.||.||.|||
BPUM_3615___y    372 GCTGATTGCGATTTTCGTTTTGGCTCAAATGCTT-GGACTCATTAACAGC    420

BSNT_05162___    430 CA-CTGGCTGCTAATCTTGCTTTATATCGGCGGCCTGATCCCGATGAATA    478
                     || ||.|| .||.||.|||.|||||...|||||.|..||.||||||||||
BPUM_3615___y    421 CATCTTGC-ACTGATTTTGATTTATGCAGGCGGACAAATTCCGATGAATA    469

BSNT_05162___    479 CGTATTTGATGAAAGGGTACATGGATTCCATTCCGATGGATTTAGACGAA    528
                     |||||||.||||||||.||..|.|||.|||||||||.||||.|.||.|||
BPUM_3615___y    470 CGTATTTAATGAAAGGCTATCTTGATGCCATTCCGAAGGATCTTGATGAA    519

BSNT_05162___    529 AGCGCCAAGATTGACGGAGCCAGCAGCA----CCAGAATCTTCTTCCAGA    574
                     ...||||..||.|||||.||..|  |||    |  ||||.|||.||||.|
BPUM_3615___y    520 TCAGCCAGAATGGACGGCGCAGG--GCATTTTC--GAATTTTCATCCAAA    565

BSNT_05162___    575 TCATTCTGCCATTATCAAAACCGATGGCGGCAGTCGTGGCCATGAACGGC    624
                     |.|||.||||..|..|.||.||.||...|||.||.||.|||||.|||...
BPUM_3615___y    566 TTATTATGCCGCTTGCTAAGCCCATTTTGGCGGTTGTCGCCATCAACTCA    615

BSNT_05162___    625 TTTACCGGTCCGCTCGGAGATTTTGTGCTGTCC----TCAACCATATTG-    669
                     |||||.||.||.||.||.|||||..|..|.|||    ||      |||| 
BPUM_3615___y    616 TTTACAGGACCACTGGGTGATTTCATTATCTCCAGTGTC------ATTGT    659

BSNT_05162___    670 -AGAACGCCTGAATCATATACATTGCCCG-TCGGTCTATTCAATTTAGTG    717
                      .|..|.||.|||...|||||..| |||| |||||||.|.||||.|||| 
BPUM_3615___y    660 TCGCTCACCCGAAATGTATACGCT-CCCGATCGGTCTGTACAATCTAGT-    707

BSNT_05162___    718 AATGATGTC---ATGGGGGCCAGCTATACGACATTTGCGGCCGGAGCCCT    764
                      ||.| |.|   ||||||||||||||.|||||.|||||.|||||.||..|
BPUM_3615___y    708 -ATCA-GACAAAATGGGGGCCAGCTACACGACCTTTGCAGCCGGGGCTTT    755

BSNT_05162___    765 GCTTATCAGC-ATACCGGTTGCCGTTA-TCTTTATCATGCTGCAAAAGAA    812
                     .||.|| .|| ||.||.||.| |.||| |.|||.|..||.|.|||||..|
BPUM_3615___y    756 ACTCAT-TGCGATTCCAGTCG-CTTTATTGTTTCTTGTGTTACAAAAACA    803

BSNT_05162___    813 TTTTGTATCCGGATTAACCGCAGGCGGAACGAAGGGCTAA    852
                     .|||||.|||||..|.||...|||.||.||.||.||.|||
BPUM_3615___y    804 ATTTGTGTCCGGCCTCACACAAGGTGGGACAAAAGGATAA    843


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05162 and BPUM_3615

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
