Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05165 and BPUM_3613

See Amino acid alignment / Visit BSNT_05165 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:49
# Commandline: needle
#    -asequence dna-align/BSNT_05165___yvfK.1.24716.seq
#    -bsequence dna-align/BPUM_3613___cycB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05165___yvfK-BPUM_3613___cycB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05165___yvfK-BPUM_3613___cycB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05165___yvfK
# 2: BPUM_3613___cycB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1388
# Identity:     841/1388 (60.6%)
# Similarity:   841/1388 (60.6%)
# Gaps:         244/1388 (17.6%)
# Score: 2263.0
# 
#
#=======================================

BSNT_05165___      1 ATGAAAATGGCAAAAAAGTGTTCCGTATTCATGCTCTGCGCAGCTGTCAG     50
                     |||||||.||.||||   ||..|...||| ||        ||||.||| |
BPUM_3613___c      1 ATGAAAAAGGGAAAA---TGGGCGACATT-AT--------CAGCAGTC-G     37

BSNT_05165___     51 T--------------TTATCCTTGGCGGCTTGCGGCCCAAAGGA------     80
                     |              ||.|.||| .||||||||||.||  ||||      
BPUM_3613___c     38 TTGGGACTGCTGTACTTCTGCTT-TCGGCTTGCGGACC--AGGAGATGAC     84

BSNT_05165___     81 -----AAGC--AGCAGCGCCA-AATCGA---GTTCAAAAGGGTCAGAGCT    119
                          ||||  |.||..|||| .|||.|   ||.|||       |||.||
BPUM_3613___c     85 AATTCAAGCGGATCACAGCCAGCATCTACAGGTACAA-------AGACCT    127

BSNT_05165___    120 TG-TTGTATGGGAGGA--TAAAGAAAAGAGCATC----GGCATTAAAGAC    162
                     || |.||.|||||.||  |.||.||      |||    ||.|||.|||||
BPUM_3613___c    128 TGCTAGTGTGGGAAGACGTCAAAAA------ATCTGATGGGATTCAAGAC    171

BSNT_05165___    163 GCCGTTGCTGCGTTTGAAAAAGAGCATGATGTGAAGGTCAAAGTCGTTGA    212
                     ||.||....|..||.||||||.|.|||||||||||..|||||||.||.||
BPUM_3613___c    172 GCTGTAAAAGAATTCGAAAAACAACATGATGTGAAAATCAAAGTGGTCGA    221

BSNT_05165___    213 AAAACCGTATGCCAAGCAGATTGAAGATTTGCGAATGGACGGACCGGCCG    262
                     ||||.|.||||||.|.||.|||||||.|.||||..|.||.|||.|.||.|
BPUM_3613___c    222 AAAAGCTTATGCCGATCAAATTGAAGCTCTGCGTCTAGATGGAGCAGCTG    271

BSNT_05165___    263 GCACAGGCCCTGACGTGTTAACAATGCCAGGGGACCAAATCGGAACCGCT    312
                     |.|||||.||.|||||..|.||.|||||....||.|||||.|||.|.|||
BPUM_3613___c    272 GGACAGGTCCAGACGTCATCACGATGCCTCACGATCAAATTGGATCAGCT    321

BSNT_05165___    313 GTCACGGAAGG---ATTACTCAAGGAATTACATG--------TCAAAAAA    351
                     |||||.||.||   |||||   |||||    |||        ||||||| 
BPUM_3613___c    322 GTCACTGAGGGGCTATTAC---AGGAA----ATGAAGCCAGATCAAAAA-    363

BSNT_05165___    352 GACGTTCAATC-ACT--TTATACTGACGCTTCCATTCAGTCTCAAATGGT    398
                        ||  .||| |||  || .||.||||..||.|||||.||.||||.|||
BPUM_3613___c    364 ---GT--GATCGACTCCTT-CACAGACGAATCGATTCAATCACAAACGGT    407

BSNT_05165___    399 AGATCAAAAGCTTTATGGACTGCCAAAAGCGGTCGAAACGACTGTCCTTT    448
                     |||....|||||.|||||.||.||.|||.|.||.|||||.||.||.||||
BPUM_3613___c    408 AGACGGCAAGCTGTATGGTCTTCCTAAATCCGTTGAAACTACGGTGCTTT    457

BSNT_05165___    449 TTTACAACAAAGATCTCATCTCCGAAAAGGAATTGCCCAA-AACGCTGGA    497
                     ||||.||.||||||   ||...|.||||||.|    |||| .||.||.||
BPUM_3613___c    458 TTTATAATAAAGAT---ATTGTCAAAAAGGCA----CCAACGACACTTGA    500

BSNT_05165___    498 AGAGTGGTACGA-CTATTCCAAAAAGACTG-CTAATGGCAGCCAATTTGG    545
                     .|..|||||.|| || |||.|||||| ||| |.||.|.|.|..|.|..||
BPUM_3613___c    501 TGGCTGGTATGATCT-TTCGAAAAAG-CTGACAAAAGACGGAAAGTACGG    548

BSNT_05165___    546 CTTTTTAGCCCTATTTGATCAAATTTATTATGCAGAAAGTGTGATGAGCG    595
                     ||||.|.||...||..|||.|.|||||.||.|||.|||||||..|..|||
BPUM_3613___c    549 CTTTGTTGCAAAATGGGATGAGATTTACTACGCACAAAGTGTTTTAGGCG    598

BSNT_05165___    596 GATATGGCGGATACATTTT----TGGAAAGGCCA--------AAGATGGG    633
                     |||.|||.||.||.|||||    ..||||.||.|        |.||||.|
BPUM_3613___c    599 GATCTGGGGGCTATATTTTCAAGCAGAAAAGCGACGGCTCTTATGATGTG    648

BSNT_05165___    634 AGCTATAACCCGTCAGACATTGGAATTAATAATGAAGGAGCTGTCAAAGG    683
                     |   ||         ||.|||||..|.||.||.||.||.||||||.||||
BPUM_3613___c    649 A---AT---------GATATTGGTTTGAACAACGATGGTGCTGTCCAAGG    686

BSNT_05165___    684 TGCGGCGCTGA-------TTCAGAAGTTTTACAAAGATGGCCTGTTCCCG    726
                     ||       ||       ||||.||.||.|..|..||.||.||.||||||
BPUM_3613___c    687 TG-------GAGAATATGTTCAAAAATTCTTTAGCGAAGGACTTTTCCCG    729

BSNT_05165___    727 GCTGGCATTATTGGAGAACAAGGGATTAACGTATTGGAATCGCTGTTCAC    776
                     ...|||||.|||||.||||||||.||.||.||..|..|.||..|.|||||
BPUM_3613___c    730 AAAGGCATCATTGGGGAACAAGGAATCAATGTCCTCAACTCCTTATTCAC    779

BSNT_05165___    777 AGAAGGAAAA--GCCGCCGCAATTATCTCTGGGCCATGG----------A    814
                     |||  |||||  |||||.||..|.||.|||||.||||||          .
BPUM_3613___c    780 AGA--GAAAAAGGCCGCTGCTGTCATTTCTGGTCCATGGTCATTCGGTCC    827

BSNT_05165___    815 ATGTA--GAAGCTTTTTCAAAAGCAGGAATCAATTATGGCATTACGAAAC    862
                     ||.||  ||||||            ||.||..||||.||..|.||..|||
BPUM_3613___c    828 ATATAAGGAAGCT------------GGGATTGATTACGGTGTGACCGAAC    865

BSNT_05165___    863 TGCCGAAGCTGGAAAATGGGAAAAACATGAGCTCCTTTATCGGCGTCAAA    912
                     ||||.|..||....||.||.|||.|.||||||||.||..|.||.|||||.
BPUM_3613___c    866 TGCCAACACTCCCTAACGGAAAACATATGAGCTCATTCTTAGGTGTCAAG    915

BSNT_05165___    913 AGCTACAACGT-TAGTGCATTTTCAAAGAATGAAGAGCTGGCGCAAGAAT    961
                     ||||||||||| |..| |.|.|||.||.|||.||||.||.||..|..|||
BPUM_3613___c    916 AGCTACAACGTCTCCT-CTTATTCTAAAAATAAAGAACTTGCTGAGAAAT    964

BSNT_05165___    962 TAGCCGTTTTTCTGGCAAATGAAAAAAATTCTAAAACACGATATGAAGAA   1011
                     |.|..|..|||.|..|.||.|||||||||.|.||.|..||.|.|||||..
BPUM_3613___c    965 TTGTTGAATTTATCACGAACGAAAAAAATGCGAAGAAGCGCTTTGAAGTG   1014

BSNT_05165___   1012 ACGAAAGAAGTTCCTGCTGTGAAATCCCTAGCCAATGA-----CCCGGCT   1056
                     ||..|.|||.||||..|.||||||    .|||..||||     ||.|.| 
BPUM_3613___c   1015 ACAGAGGAAATTCCACCAGTGAAA----AAGCTGATGAAAGATCCAGTC-   1059

BSNT_05165___   1057 ATTA-TGAAAA-GCGAGGCGGCACG----GGCTGTTACTGAACAATCCCG   1100
                     ||.| .||||| ||.|      |||    .||..||.|..|||||.|   
BPUM_3613___c   1060 ATCACAGAAAATGCCA------ACGCAGATGCAATTTCAAAACAAAC---   1100

BSNT_05165___   1101 TTTCTCAGA-----GCCA-----ACCCCAAATATTCCGGAAATGAATGAA   1140
                            ||     ||||     ||.||.||.|.|||.||||||...|||
BPUM_3613___c   1101 -------GAAATATGCCACACTGACACCGAACAATCCTGAAATGGCAGAA   1143

BSNT_05165___   1141 ATATGGACGCCGGCTGATTCAGCATTACAGACGG-----TTGCAACAGG-   1184
                     .|.||||..|||..||||...||.|||     ||     |||||||.|| 
BPUM_3613___c   1144 GTGTGGAAACCGATTGATAGTGCTTTA-----GGACTCATTGCAACTGGT   1188

BSNT_05165___   1185 -GAAGGCAGATCCGAAACAAGCATTGGATCAAGCAGCTGAAACGGCCAAA   1233
                      |.|  |||||..||||.|.||.||.|||.|.|| |.|.||    .||||
BPUM_3613___c   1189 CGTA--CAGATGTGAAAAAGGCTTTTGATGATGC-GGTCAA----TCAAA   1231

BSNT_05165___   1234 -GGA----CAAATTAAGGCAAAGCACAGCGGAAAATAA   1266
                      .||    ||||||||.|||||.|||..|   ||||||
BPUM_3613___c   1232 TCGACTCTCAAATTAAAGCAAATCACTCC---AAATAA   1266


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