Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05761 and BPUM_3611
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence dna-align/BSNT_05761___ywfK.1.24716.seq
# -bsequence dna-align/BPUM_3611___ywfK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05761___ywfK-BPUM_3611___ywfK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05761___ywfK-BPUM_3611___ywfK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05761___ywfK
# 2: BPUM_3611___ywfK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 982
# Identity: 594/982 (60.5%)
# Similarity: 594/982 (60.5%)
# Gaps: 164/982 (16.7%)
# Score: 1616.5
#
#
#=======================================
BSNT_05761___ 1 TTGTATTACGACGTGCTGAAAACGTTTATAGCGGTGGTAGAAGAAAAAAA 50
.||||||||||.|..|||||.||.|||.|..|.||.||.|||||.|||||
BPUM_3611___y 1 ATGTATTACGATGCACTGAAGACATTTGTGACAGTTGTGGAAGAGAAAAA 50
BSNT_05761___ 51 CTTCACAAAAGCGGCGGAAAAGCTGATGATCTCCCAGCCCAGCGTCAGTC 100
|||.|||||.||.||..||||||||...||.||.|||||.||.|||||||
BPUM_3611___y 51 CTTTACAAAGGCAGCCCAAAAGCTGCGAATTTCTCAGCCAAGTGTCAGTC 100
BSNT_05761___ 101 TGCATATCAAAAATCTT-GAGAAAGAATTTCAAACGGCTCTTCTGAACAG 149
|.|||||.||.|| ||| |||.|.|||||.||.||.|.|||.|||||..|
BPUM_3611___y 101 TTCATATTAAGAA-CTTGGAGCAGGAATTCCAGACCGTTCTGCTGAATCG 149
BSNT_05761___ 150 GTCGCCAAAACACTTTACGACAACGCCGACAGGAGACATTTTATATCAAA 199
.||||||||.||.||.||....||.||.||.||.||.||..|.||.||..
BPUM_3611___y 150 TTCGCCAAAGCAATTAACTGTTACACCAACTGGGGATATGCTGTACCATC 199
BSNT_05761___ 200 GAGCAAAGCAAATGGT--GTTTCTCTACGAACAAGCCAAGGCTGAAATCT 247
||.||||.|||||..| ||| |.||.|||||.||.|||...||.||.|
BPUM_3611___y 200 GATCAAAACAAATCATTCGTT--TATATGAACAGGCGAAGCAGGATATTT 247
BSNT_05761___ 248 ATGCGCATCATCA-CTATGTG-AAGGGTGAA-TTGAAAATAGCTGCAAGC 294
|||.||||||||| ||| | |||.|.||| .|||.|||.|..||.||.
BPUM_3611___y 248 ATGAGCATCATCATCTA---GCAAGAGGGAAGCTGACAATCGGGGCGAGT 294
BSNT_05761___ 295 TTTACAATCGGTGAGTATATTCTTCCGCCGCTATTGGCCCAGCTGCAAAA 344
|||||.||.||.|||||..|.||.||||...|||||||..||.|.||..|
BPUM_3611___y 295 TTTACGATTGGAGAGTACGTGCTGCCGCAAATATTGGCAGAGTTTCATCA 344
BSNT_05761___ 345 GCTGTATCCAGAGCTGAATCTAGATGTCATGATTGGCAATACAGAGGAGG 394
|||.|||||..|..||.|..|.||.||..|.||||..||.|||||||.|.
BPUM_3611___y 345 GCTCTATCCGCATGTGGACATTGAGGTGGTCATTGATAACACAGAGGCGA 394
BSNT_05761___ 395 TCAGCGAG---CGTGTGCGGATGCTTCAGGCTGATATCGGGCTGATTGAA 441
|| ||.|| |||..||..|| |.||.|..||.|||||..|.||.|||
BPUM_3611___y 395 TC-GCCAGTCACGTCCGCTTAT--TCCATGTCGACATCGGTTTAATCGAA 441
BSNT_05761___ 442 GGACATACAAACGAGAATGAGCTGGAAATTGAACCGTTCATGGAGGATGA 491
|||||.||.||.||.||.||..||..|.|.|||.|.||..|.||.||.||
BPUM_3611___y 442 GGACAGACGAATGACAAAGAATTGACAGTAGAAACTTTTCTAGAAGACGA 491
BSNT_05761___ 492 AATGTGCATTGCCGCTCCAAATCAG--CATCC----GCTCGCCGGGCGGA 535
..|.|..||.|..||.|| ||.|| ||||| |||
BPUM_3611___y 492 GCTTTATATCGTTGCACC--ATTAGATCATCCCTTTGCT----------- 528
BSNT_05761___ 536 AAGA-----GATTTC------GATCAGCGATTTGCAGAACGAAGCGTGGG 574
|||| |||.|| |||| |.|||||.||||||.|.|||.
BPUM_3611___y 529 AAGAAAAAGGATGTCACGATTGATC----AATTGCAAAACGAAACATGGA 574
BSNT_05761___ 575 TGACAAGAGAGAAAGGCTCCGGGACGAGAGAATATCTCGATCATGTACTC 624
|.||.|||||..||||.||.||.||..|||||||..|..|.||.||.||.
BPUM_3611___y 575 TCACGAGAGAAGAAGGATCAGGCACCGGAGAATACTTACAGCACGTTCTG 624
BSNT_05761___ 625 AGTTCAAATGGACTTCGGCCGAAATCA---ATGT---TCACCATCAGCAG 668
|..||||||||||| ||||.|| |.|| |.||..|.|||||
BPUM_3611___y 625 AAATCAAATGGACT------GAAAGCACGGACGTTTGTGACGTTTAGCAG 668
BSNT_05761___ 669 CAATCAAG-GTGTAAAGGAAGCGGTGATTAACGGCATGGGACTTTCGGTT 717
|||||||| |..|||| |||||.||||||.|.||.|||||.|||||.|||
BPUM_3611___y 669 CAATCAAGCGATTAAA-GAAGCTGTGATTCATGGAATGGGGCTTTCTGTT 717
BSNT_05761___ 718 CTATCCAGAAGCGTACTGCATAAGGATTTGATCCACCGCGAAATC----- 762
.|||| ||| || ||.||.||||.||.|..|.|
BPUM_3611___y 718 TTATC--GAA---------AT----ATGTGCTCCAGCGAGGCAGCATTGG 752
BSNT_05761___ 763 --------------TCAATTCTGCATATTAAA------GATTTCTCGTTA 792
|||.||||| |.|.| ||||||
BPUM_3611___y 753 CGGTGAACTGGCGGTCATTTCTG----TGAGAGGAATGGATTTC------ 792
BSNT_05761___ 793 AAGCGCAAGCTGTCTTACATTCATTCTCCTCTCAT-------GGAGAATA 835
||.||.||..|.|||||..|..|.||.|| ||| ||| |||
BPUM_3611___y 793 AAACGAAAATTCTCTTATGTCGAGTCGCC---CATGACAGGGGGA-AAT- 837
BSNT_05761___ 836 CAAAAAATAAAGAAAT--TT------TTATTACGATGCTGAAA---AGCA 874
||||||||||||.| || ||.|||.| |||| ||.|
BPUM_3611___y 838 --AAAAATAAAGAATTGCTTGTAGAATTGTTAAG-----GAAAGAGAGAA 880
BSNT_05761___ 875 A------TTATCAATCACAGCTGCTGAAATGA 900
| ||.|| |.|||..|
BPUM_3611___y 881 AAGACGCTTCTC---CTCAGTAG--------- 900
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