Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01678 and BPUM_3600
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:11
# Commandline: needle
# -asequence dna-align/BSNT_01678.1.24716.seq
# -bsequence dna-align/BPUM_3600___yhaZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01678-BPUM_3600___yhaZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01678-BPUM_3600___yhaZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01678
# 2: BPUM_3600___yhaZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1165
# Identity: 387/1165 (33.2%)
# Similarity: 387/1165 (33.2%)
# Gaps: 644/1165 (55.3%)
# Score: 935.0
#
#
#=======================================
BSNT_01678 0 -------------------------------------------------- 0
BPUM_3600___y 1 ATGTGGGAGGCGGACACGATCGAACCATTAAAACATGTGTACAATGAATT 50
BSNT_01678 0 -------------------------------------------------- 0
BPUM_3600___y 51 ATTTATCAAAGATTTAGCAGAGAAATTCGCACAGACTTCGTCTGAATTTG 100
BSNT_01678 0 -------------------------------------------------- 0
BPUM_3600___y 101 ATGCTGAGCCGTTCAAGCGACTCGTATTTCAAGAGGATTGGGAGCAGCTT 150
BSNT_01678 0 -------------------------------------------------- 0
BPUM_3600___y 151 GAGTTAAAAGGGCGGATGAGACGAGTCACTGAATCGATGCATGCCTGTCT 200
BSNT_01678 0 -------------------------------------------------- 0
BPUM_3600___y 201 GCCGGCAGATTATGAGAAGGCAATGGAGATACTGCGTCAGGCAGCCCCGT 250
BSNT_01678 0 -------------------------------------------------- 0
BPUM_3600___y 251 ATTTTTCAGGGCTTAGTGCGCTCGTCTTTCCAGACTACGTCGAGACGTAC 300
BSNT_01678 0 -------------------------------------------------- 0
BPUM_3600___y 301 GGTCTTGCACATTGGGACCTCTCGATCAAAGCGCTCGAATTTTTCACACC 350
BSNT_01678 0 -------------------------------------------------- 0
BPUM_3600___y 351 CTTTTCCACTTCTGAATTTGCTGTTCGGCCATTTCTGATTCAAGATCAAG 400
BSNT_01678 0 -------------------------------------------------- 0
BPUM_3600___y 401 GCAAAATGCTGGCGCAAATGCTTGTATGGTCTCAGGATCAAAATGAGCAT 450
BSNT_01678 1 ------------------------------------------------TT 2
||
BPUM_3600___y 451 ATACGGAGGCTGGCTAGTGAAGGGTGTAGACCACGTCTGCCATGGGGCTT 500
BSNT_01678 3 GAAATCGGACCCTTC------------CCCC---GT---ATTGCCGATCC 34
|||.|.|||||| |||| || ..||||.||..
BPUM_3600___y 501 ---ATCTGTCCCTTCACTTAAAAAGAACCCCTCGGTCACGCTGCCCATTT 547
BSNT_01678 35 TTGAGAAGCTG-ATGCAGGACGAGT--CCTTATATGTAAGAAAAAGCGTG 81
|.||.||..|| |.||| |||..|| |.||||.||.| .|||||.||.
BPUM_3600___y 548 TGGAAAACTTGAAGGCA-GACCCGTCGCGTTATGTGCA--GAAAAGTGTA 594
BSNT_01678 82 GCCAACAACCTTAATGATATATCAAAAACGCATCCTCATTTACTGAGAAA 131
||.||..|..|.||||||||.||...||..||.||..||.||.|||
BPUM_3600___y 595 GCGAATCATTTAAATGATATTTCTGCAATTCAGCCAGATCTAATGA---- 640
BSNT_01678 132 AGTCGCAGA----TCAA---TGGTACGGAACACATC-CCCATACAGACTG 173
.||||| |||| |||||.||||| ||.| ..|||||..||||
BPUM_3600___y 641 ---AGCAGACGGTTCAAAACTGGTATGGAAC-CAACGAACATACCAACTG 686
BSNT_01678 174 GATTATCAAACACGCCTATCGGACCTTATTAAAAAAGGGGGATAAACAGG 223
||||.|||||||.||.|..||.||.|||.|.|||||.||.||| .|||.
BPUM_3600___y 687 GATTGTCAAACATGCATCCCGTACTTTACTCAAAAAAGGAGAT--CCAGC 734
BSNT_01678 224 CCTTA--GCGCTTTTTGGTTAT---GAAAATGCTGATTCGATACAACTAC 268
..||| |||.|.|||||.||| ||..||.| ||.|| |.||..||.
BPUM_3600___y 735 TATTATGGCGTTGTTTGGCTATGGGGACCATCC--ATCCG-TTCACGTAA 781
BSNT_01678 269 ATGATTT-AACATGCCAGCCCAAA--CGTAT--AGTTATTGGCG---AAA 310
..||||| ||.|| .|..|||| |.||| || ||.|||| |||
BPUM_3600___y 782 CGGATTTGAAGAT---CGTACAAAATCCTATTCAG--ATCGGCGAGAAAA 826
BSNT_01678 311 GCCTTGAATTTTC---TTTCTCTATTCATTCAGATAGG--GATCAAAAAG 355
|||.||||| ||.|.||| ||..|.||||.| |.| ||||
BPUM_3600___y 827 ----TGACTTTTCATTTTACCCTA--CAAGCCGATAAGCCGTT---AAAG 867
BSNT_01678 356 -TAAGAATTGAGTACGCAATTGATTTTGTAAAAGCAAGAGG--CCAGCGT 402
|..|..|.|||||.||.|||||.|.|||.|||||..|.|| || ||.
BPUM_3600___y 868 CTGCGTGTAGAGTATGCCATTGACTATGTCAAAGCTCGGGGGACC--CGC 915
BSNT_01678 403 CATCAGAAAGTATTTAAAATAACA------GAAACAACTATGCGAAAAAA 446
.||||.||||||||||||||.||| |||||| ||.|.||
BPUM_3600___y 916 AATCAAAAAGTATTTAAAATCACAGAGTTTGAAACA-------GACACAA 958
BSNT_01678 447 CGAAACGAAATCACACACAAGAAT----------CCAATCCTTTAAGGAT 486
|| |.|||.| .||||| .|||||.|||.|..||
BPUM_3600___y 959 CG--------TTACATA-GAGAATTCGTCAGATCACAATCTTTTCAAAAT 999
BSNT_01678 487 TTAACCACCAGAAAGCATTACAAAGGAATTCATACATTATCAGTGATCAT 536
.|.||.||.|||||.|||||..||||||..||||||.||.||.|.|||||
BPUM_3600___y 1000 ATGACGACGAGAAAACATTATGAAGGAACCCATACACTAACAATCATCAT 1049
BSNT_01678 537 CAATGGAGAGGT-----AAAAG-ATTCATTGGATTTCCAAGTTTGCTGA- 579
||| .||| ||||| ||..||| |||||..||| |..|.||
BPUM_3600___y 1050 CAA-----CGGTATTCCAAAAGCATCGATT-GATTTTGAAG-TAACAGAA 1092
BSNT_01678 579 --------------- 579
BPUM_3600___y 1093 GACAGCAACTCATGA 1107
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