Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00895 and BPUM_3591
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:37
# Commandline: needle
# -asequence dna-align/BSNT_00895.1.24716.seq
# -bsequence dna-align/BPUM_3591___ydeG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00895-BPUM_3591___ydeG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00895-BPUM_3591___ydeG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00895
# 2: BPUM_3591___ydeG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1303
# Identity: 724/1303 (55.6%)
# Similarity: 724/1303 (55.6%)
# Gaps: 359/1303 (27.6%)
# Score: 2414.0
#
#
#=======================================
BSNT_00895 0 -------------------------------------------------- 0
BPUM_3591___y 1 GTGTTAGATACAGAACAAAATGTAATGAAGAATTATATAGATTCACCCCA 50
BSNT_00895 0 -------------------------------------------------- 0
BPUM_3591___y 51 AAAATTGAAAAAATTATTTAAACGAGTATTGTTCGTTGTCAGTCTATCGC 100
BSNT_00895 0 -------------------------------------------------- 0
BPUM_3591___y 101 AAATATTTGGAGGGGCTGGTATAGCCGCAGGAATTACGGTAGGTGCACTT 150
BSNT_00895 0 -------------------------------------------------- 0
BPUM_3591___y 151 TTAGCTCAACAAATGCTTGGAACTGAAGCCTATGCAGGAGTCCCAATCGC 200
BSNT_00895 0 -------------------------------------------------- 0
BPUM_3591___y 201 TTTATTTACTTTGGGGTCAGCTGGGTCAGCCTTCATTGTAGGAAAGCTTT 250
BSNT_00895 1 ---------------------------------------ATGAT--TGGC 9
.||.| |||.
BPUM_3591___y 251 CGCAACGTTATGGACGACGCATCGGTTTATCGGCAGGTTTTGTTGCTGGA 300
BSNT_00895 10 GGACTTGGAGCAATAGGCGTTATTATGGCAGCAATCATAAATAGTATTTT 59
||.||.||||||||.||.||..|.||.|||||.|..||.|| ||||.|
BPUM_3591___y 301 GGGCTAGGAGCAATTGGTGTAGTGATTGCAGCTACGATGAA---TATTGT 347
BSNT_00895 60 CTTGTTATTTATTGCGTTGC---TTATTTACGGTGCAGGTACAGCCACTA 106
|.|.|||.|..||||.|.|| |.||||||||.|||||.|||||.||.|
BPUM_3591___y 348 CATTTTACTATTTGCATCGCTCTTCATTTACGGCGCAGGAACAGCTACAA 397
BSNT_00895 107 ATTTACAGGCGCGTTATGCTGGTACAGACTTAGCAAATCATAAGCAGCGA 156
|||||||.||.|||||||||||.||.||||||||.|||..|||.||.||.
BPUM_3591___y 398 ATTTACAAGCTCGTTATGCTGGGACTGACTTAGCGAATTCTAAACAACGT 447
BSNT_00895 157 GCGACTGCTGTTAGTATTACGATGGTTTTTACTACATTTGGCGCAGTGGC 206
||.|||||..|||||||.||.|||||..|.||.||||||||.|||||.||
BPUM_3591___y 448 GCAACTGCAATTAGTATGACAATGGTCATGACAACATTTGGAGCAGTAGC 497
BSNT_00895 207 AGGTCCAAGCTTAG-TGAATGTGATGGGGGATTTCGCTCTTTCTATTGGT 255
||||||.|..|||| |||| .||||||||||.||.||..|.||.||||||
BPUM_3591___y 498 AGGTCCGAATTTAGTTGAA-ATGATGGGGGAATTAGCAGTATCAATTGGT 546
BSNT_00895 256 GTTCCATCACTTGCTGG-CCCTTTCATTTTAGCCGCAGCAGCATATATGT 304
||||||.|||||||.|| |||||| ||||||.|.||||||||||.|||..
BPUM_3591___y 547 GTTCCAGCACTTGCGGGTCCCTTT-ATTTTATCAGCAGCAGCATTTATTG 595
BSNT_00895 305 TAGCAGGTGTGGTCCTTTTCATTATGCTTCGTCCAGATCCATTAGTTATA 354
||||||||.|.||||||||.|||.||||.|||||.|||||.|||||.||.
BPUM_3591___y 596 TAGCAGGTCTTGTCCTTTTTATTCTGCTGCGTCCTGATCCGTTAGTCATT 645
BSNT_00895 355 GCAAGAACAATAG-AAGCGGCAAATGAAGAGCCTGG---TG---ATAAAG 397
||...||.||||| ||....|||| |.|||||.||| || ||.||.
BPUM_3591___y 646 GCTCAAAAAATAGCAATTTACAAA-GCAGAGCATGGGCATGGAAATCAAC 694
BSNT_00895 398 GACATT-TGGCGGCAACTGAGCATACAGAAAACAAA----AAAGGGATAA 442
||.||| || |||| .||.||||.|.| ||||||.|.|
BPUM_3591___y 695 GAGATTCTG-------CTGA----TCAAAAAATAGATAGTAAAGGGCTTA 733
BSNT_00895 443 TCGTTGGGGCAACGGTTATGGTTCTT-ACCCAAATAGTAATGGTAGCTAT 491
..||.||.||.|||||||| |.|||| ||.|||||.||.|||||.||..|
BPUM_3591___y 734 CAGTAGGTGCCACGGTTAT-GATCTTAACTCAAATCGTCATGGTTGCACT 782
BSNT_00895 492 TATGACAATGACACCGGTTCATATG-AGACATCATGGGCATGACTTGGGG 540
.|||||.|||||||||||.|||||| || ||||||||.||||..||.|..
BPUM_3591___y 783 CATGACCATGACACCGGTGCATATGCAG-CATCATGGTCATGGATTAGCC 831
BSNT_00895 541 GCAGTAGGGC-TTGTTATTGGTTTTCATATAGGTGCTATGTATCTCCCTT 589
|.||| |||| ||||.||||||||||||||||||||.||||||||.||||
BPUM_3591___y 832 GAAGT-GGGCATTGTGATTGGTTTTCATATAGGTGCGATGTATCTTCCTT 880
BSNT_00895 590 CACTGGTTACAGGTGTTCTTGTAGATAGGTTGGGACGTACCGCAATG-GC 638
|||...|.||.|||||.||||||||||...|.|||||.||.||.||| ||
BPUM_3591___y 881 CACCTATCACGGGTGTACTTGTAGATAAACTAGGACGAACAGCTATGAGC 930
BSNT_00895 639 TATTTCCTCTGGAACAACGTTGCTTTTGGCAGGTGTAATAGCAGCATTTG 688
||..|.||.||.|..||.|||.|..|.||.|||.||.||||||||||.|
BPUM_3591___y 931 -ATAGCGTCGGGCATCACATTGTTACTTGCTGGTTTATTAGCAGCATTCG 979
BSNT_00895 689 CTCCGGGAGATTCTATGGTTCTTCTCGTCATTGCTCTTTCTTTACTCGGA 738
|.||..|.|||||.|||.||||..|..||||||||||.||||||||.|||
BPUM_3591___y 980 CACCAAGTGATTCAATGATTCTATTAATCATTGCTCTGTCTTTACTTGGA 1029
BSNT_00895 739 TTAGGGTGGAATTTTGGTTTGATAAGCGGGACTGCCCTTATTGTAGATTC 788
||.||.|||||.||||||||.||.||.||.|||||.|..||.||.|||||
BPUM_3591___y 1030 TTGGGATGGAACTTTGGTTTAATTAGTGGTACTGCTCAAATAGTTGATTC 1079
BSNT_00895 789 AACTG----ATAGTGCCACACGAGCTAAAACGCAGGGGACAGTGGATGTT 834
.||.| || |.||.||.||.|||||.||.||.|||.|.||||||
BPUM_3591___y 1080 TACAGAACCAT----CAACCCGGGCAAAAACCCAAGGAACACTCGATGTT 1125
BSNT_00895 835 CTGATTGCGTTGTCAGGAGCTGCTGGCGGAGCATTATCTGGAATGATTGT 884
.|..|||||||..||||.|||.|||||||.||..|.||.||||||||.||
BPUM_3591___y 1126 TTTGTTGCGTTAGCAGGTGCTTCTGGCGGCGCTCTTTCAGGAATGATCGT 1175
BSNT_00895 885 GGCAGGGT-CAAGTTA-CCTCGCATTATCATTTACTGGAGGGATGTTGTC 932
.|| |..| |.||||| .|| ||||||||.||.|..|||||.||.||.||
BPUM_3591___y 1176 TGC-GAATACGAGTTATGCT-GCATTATCTTTAAGCGGAGGAATTTTATC 1223
BSNT_00895 933 CTTATTACTCATTCCAGTGGTGGTATGG---TTTAGGGGCCGCTAA---- 975
.|||.|.|||||.||.||..|.||.||| ||||...| |||
BPUM_3591___y 1224 GTTAATTCTCATACCCGTCATAGTTTGGTCTTTTAAAAG----TAAAACA 1269
BSNT_00895 975 --- 975
BPUM_3591___y 1270 TAA 1272
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