Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03933 and BPUM_3590

See Amino acid alignment / Visit BSNT_03933 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:25
# Commandline: needle
#    -asequence dna-align/BSNT_03933.1.24716.seq
#    -bsequence dna-align/BPUM_3590___yrhL.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03933-BPUM_3590___yrhL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03933-BPUM_3590___yrhL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03933
# 2: BPUM_3590___yrhL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2046
# Identity:     742/2046 (36.3%)
# Similarity:   742/2046 (36.3%)
# Gaps:        1077/2046 (52.6%)
# Score: 1706.0
# 
#
#=======================================

BSNT_03933         0 --------------------------------------------------      0
                                                                       
BPUM_3590___y      1 ATGAACAGCAAGGAGAATCGTTTACGTTATATATTAGGATTAGATGGGCT     50

BSNT_03933         0 --------------------------------------------------      0
                                                                       
BPUM_3590___y     51 AAGAGCCATTGCTGTATTGGCGGTCATTGCTTATCACTTACATATTGGAC    100

BSNT_03933         0 --------------------------------------------------      0
                                                                       
BPUM_3590___y    101 CTGCGAGCGGCGGGTTTCTTGGCGTTGATTTGTTTTTTGTGATCTCTGGT    150

BSNT_03933         0 --------------------------------------------------      0
                                                                       
BPUM_3590___y    151 TACTTGATTACGACGATCTTGTTACATAAACAGGATTTGGGCTATCAAGA    200

BSNT_03933         0 --------------------------------------------------      0
                                                                       
BPUM_3590___y    201 GCTTTTGCCATTTTGGATGGGCCGGATCAGAAGGCTCCTTCCAGCTGCTT    250

BSNT_03933         0 --------------------------------------------------      0
                                                                       
BPUM_3590___y    251 ACGTGATGATTTTCTTAACCGTCAGCTGGTGTGCGATTGCGGGTTCGAAT    300

BSNT_03933         0 --------------------------------------------------      0
                                                                       
BPUM_3590___y    301 GCACTTTTGTCCATTCGTGGCGATGCCTTATCGTCCTTTTTTTATGTCAG    350

BSNT_03933         0 --------------------------------------------------      0
                                                                       
BPUM_3590___y    351 TAACTGGTGGTACATTTTCCATCAGCTGTCTTATTTTGATAGCTTCAATG    400

BSNT_03933         0 --------------------------------------------------      0
                                                                       
BPUM_3590___y    401 CTGTATCTCCACTGAAAAATTTATGGTCTTTGGCGATTGAAGAGCAATTT    450

BSNT_03933         0 --------------------------------------------------      0
                                                                       
BPUM_3590___y    451 TATATCATTTGGCCAGTACTATTGATTGCAGGGCTAAAATGGGTAAAAAA    500

BSNT_03933         0 --------------------------------------------------      0
                                                                       
BPUM_3590___y    501 TAGATCTCATCTGCCATTGATTACCTTTGGCCTTGCACTTGTCTCCGCCT    550

BSNT_03933         0 --------------------------------------------------      0
                                                                       
BPUM_3590___y    551 TATGGATGGCGATTCTTTATTCACCAGATATGGACCCAAGCAGGGTTTAT    600

BSNT_03933         0 --------------------------------------------------      0
                                                                       
BPUM_3590___y    601 TATGGAACAGATACTCGTGCATTTGCGCTTCTGATTGGATGCAGCCTGGC    650

BSNT_03933         1 --TTG-------CACGC---GACTG---------AATTTTCGGCATTTT-     28
                       |||       ||.||   |||||         ||.||.|..|.|.|| 
BPUM_3590___y    651 ATTTGTATGGCCCATGCAAAGACTGTCCAGCAAAAAGTTACTTCCTGTTG    700

BSNT_03933        29 ------GTATTTTA----------GTGTTG--------------------     42
                           ||||||||          ||.|||                    
BPUM_3590___y    701 GCAGGCGTATTTTACATATCGCTGGTTTTGGAACGTTTGCAGTTTTTCTT    750

BSNT_03933        43 ---TGTGTCTATTTCACA---GATGAAT---ACGAGCCTTTTCTTTA-CA     82
                        |||||.|||   .||   ||.||||   ||| ||  |||||.|| ||
BPUM_3590___y    751 CTATGTGTTTAT---GCAGTGGACGAATTTGACG-GC--TTTCTCTATCA    794

BSNT_03933        83 GAGGCGGAATGCTATTCATT-AGCGTAACTGCCGCAATCCTTATTGCATG    131
                      ||||||.||||| ||.||| .|..|.|.|||.||.||..|.|||||.||
BPUM_3590___y    795 -AGGCGGCATGCT-TTTATTCTGTCTGAATGCAGCCATTTTAATTGCGTG    842

BSNT_03933       132 TGTTTGCCATCCGAGC-AGCTTTTTAGGCAA-----TCTGCTTTCATGGA    175
                     ..|.||||| ||..|| |||.|..||||.||     |||.||.|||    
BPUM_3590___y    843 CATCTGCCA-CCCTGCAAGCCTACTAGGAAAATGGCTCTCCTATCA----    887

BSNT_03933       176 GGCCGCT--TCGGTGGCTTGGAGCGAGGTCTTACGGAATTTATCTTTGGC    223
                      |||.||  ||  |||||||||..|.|.|||||.||.|||||.||.||||
BPUM_3590___y    888 -GCCACTCGTC--TGGCTTGGAAAGCGTTCTTATGGTATTTACCTGTGGC    934

BSNT_03933       224 ACTACCCTGTTATTGTGTTAAGCACGCCAGTTCA-AGAAATCGGAAACCC    272
                     |.||.||..|.||.|||.|.|.|||.||.| ||| .|||||.|||.|.||
BPUM_3590___y    935 ATTATCCCATCATCGTGCTGACCACCCCTG-TCATTGAAATTGGACAGCC    983

BSNT_03933       273 TGTTTTTTGG--CATATCG---TGCTAAAGGTCATTGTGACATGTATAC-    316
                       ||.|.|||  |.|.|||   |||   ||.||||  ||.||| |.||| 
BPUM_3590___y    984 --TTCTATGGGACGTGTCGCATTGC---AGATCAT--TGCCAT-TTTACT   1025

BSNT_03933       317 --TTGCCGAGCTTTCCTATCTTTTTATTGAGAAGCCGGTACGGACACAG-    363
                       ||||.|||..|||.||.|..||.||.|||.|||||.|.||    |.| 
BPUM_3590___y   1026 CATTGCAGAGGCTTCTTACCGCTTCATCGAGCAGCCGATTCG----CCGG   1071

BSNT_03933       364 ---GGATTTAGGCCAT-TTTTCCGCCGTG-----TTTTGATACATAGAAT    404
                        ||.||.|..|.|| ||||.|..|.||     |||.||.|.|..||..
BPUM_3590___y   1072 CTTGGCTTCAAACAATATTTTGCCTCTTGGTCTATTTGGAAAAAGGGATA   1121

BSNT_03933       405 CAAGGAATGGAAAACGACATCTGTCATCAGCAAAATGTCAATTGGTTTCA    454
                     |||..|||||...|||     |.||||    |||.|||...||||..|||
BPUM_3590___y   1122 CAAACAATGGTCTACG-----TCTCAT----AAAGTGTTCCTTGGAATCA   1162

BSNT_03933       455 ---------TTAT--TTTCGCTATACTTATT-----TTTGCAGGCGGGCT    488
                              ||||  ||         |||||     ||.|||       |
BPUM_3590___y   1163 CTGCGGCTCTTATCATT---------TTATTTACCATTGGCA-------T   1196

BSNT_03933       489 GT-CAGGGCTAGCCGGAGAGCAAAAGCATCCTACTAAATGGACCT-ATAG    536
                     || ||  |||                |||              || |||.
BPUM_3590___y   1197 GTCCA--GCT----------------CAT--------------CTCATAC   1214

BSNT_03933       537 CTCACAAGAAACAAATGC--------TGACACCAGCCAGGCTTCTGGGGA    578
                     .||.|      ||.||||        ||||||                  
BPUM_3590___y   1215 GTCTC------CACATGCCAAGGAAGTGACAC------------------   1240

BSNT_03933       579 TAAA--AAGAACGCTGCAGCAGATAAAAAAC-----ACAATCCTGAACAA    621
                      |||  ||||   |.||| |.|| |||||.|     ||..|.|.|||..|
BPUM_3590___y   1241 -AAATTAAGA---CGGCA-CCGA-AAAAAGCAGGCGACTCTACGGAATCA   1284

BSNT_03933       622 AAAACAACAGATTCCATTCAGGGTCAAAAGGAAAACAAAGATAGTGGGCA    671
                     |||||.| |||              |||||.||.|.|||         ||
BPUM_3590___y   1285 AAAACGA-AGA--------------AAAAGAAAGAAAAA---------CA   1310

BSNT_03933       672 AGAGACTCATAAAAAGAAAGACACGCA-ATCTCAACAGACGAAAGAACCC    720
                     .|||         |||||| ||| ||| |||            ||||   
BPUM_3590___y   1311 CGAG---------AAGAAA-ACA-GCAGATC------------AGAA---   1334

BSNT_03933       721 GCAGATACTGCGAAAGAGGTGTTAGCTATAGGAGATTCCGTCATGCTTGA    770
                     ||||.|.|..|.||     |..|.|||||.||.||||||||||||||.||
BPUM_3590___y   1335 GCAGTTTCACCAAA-----TTCTTGCTATTGGTGATTCCGTCATGCTAGA   1379

BSNT_03933       771 TAT--------TTCTTCACACCTGCGTCAGTCACTTTCACATGTGACGAT    812
                     .||        .||||.|.|        ||.||..|.||||..|.||.||
BPUM_3590___y   1380 CATAGCGCCAAATCTTGAAA--------AGACATATGCACAAATCACTAT   1421

BSNT_03933       813 TGATGGAAAGGTAGGAAGACAAAT----------GTCTCAAGCTTTGGAA    852
                     .||||.||||||.||.||||||||          |||   |||.|.|   
BPUM_3590___y   1422 CGATGCAAAGGTTGGCAGACAAATGAACGAAGCCGTC---AGCATCG---   1465

BSNT_03933       853 CTCGCAAGGGAGTACAAGTCTTTTAATCA-------GCCGAACAAGGCTG    895
                     ||| ||   .||||....||.||||||||       |||       ||||
BPUM_3590___y   1466 CTC-CA---CAGTATGCTTCATTTAATCAATCTAATGCC-------GCTG   1504

BSNT_03933       896 TCATCATTGAGCTTGGAACCAATGGCTACTTTACAAACAGCCAAATCGAA    945
                     |.||.|||||||||||.||.||||||||.|||||..|..||        |
BPUM_3590___y   1505 TTATTATTGAGCTTGGCACGAATGGCTATTTTACTGAGGGC--------A   1546

BSNT_03933       946 CA---ACTGC-TTCAATC-----TTTCTCAAAAGCCCATATCTATCTTGT    986
                     ||   ||.|| ||||.||     ||| |||||.||.|||||.|..|||||
BPUM_3590___y   1547 CATTGACAGCATTCATTCAGCAATTT-TCAAAGGCGCATATTTTCCTTGT   1595

BSNT_03933       987 CAATACACG-GGTTCCCCGCCAA-----TGGGAAAGCAAGGTAAATG-AA   1029
                     .|  ||||| |..||    ||||     |||||||...|.||.|||| |.
BPUM_3590___y   1596 GA--ACACGAGAGTC----CCAAGGTCTTGGGAAAATGATGTGAATGCAG   1639

BSNT_03933      1030 TCTTTGCAGCAACAGGCCCACGCACATCAAAATGTTACGTTAGTTGACTG   1079
                     ||.|| ||||.|..||||.|...||||...|||||.||..|.||.||.||
BPUM_3590___y   1640 TCATT-CAGCGAGTGGCCGATCAACATGCCAATGTGACCCTGGTCGATTG   1688

BSNT_03933      1080 GCATACAGAAGCTCTTCAGCATCCGGA--------ATATTTTACCCCTGA   1121
                     ||||.|||        |.||..|||||        .||||||...|||||
BPUM_3590___y   1689 GCATTCAG--------CCGCTACCGGACAGCCATCTTATTTTCAGCCTGA   1730

BSNT_03933      1122 TGGTGTTCACTTGGTTC--CTAAAGGGGCAAAAACTTTG--ACTGCTC-T   1166
                     ||||||||||.|  |||  |||||||..|..|.||.|||  ||.|||| |
BPUM_3590___y   1731 TGGTGTTCACCT--TTCAACTAAAGGCTCTGACACATTGACACAGCTCAT   1778

BSNT_03933      1167 TATTG-----TTC--------AGGCGATG--------AAATCGTAA   1191
                     ||..|     .||        |||.||||        ..|||.|||
BPUM_3590___y   1779 TACAGCGAGCATCAAGAAAAAAGGAGATGTGTCATCTTCATCATAA   1824


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