Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03933 and BPUM_3590
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:25
# Commandline: needle
# -asequence dna-align/BSNT_03933.1.24716.seq
# -bsequence dna-align/BPUM_3590___yrhL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03933-BPUM_3590___yrhL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03933-BPUM_3590___yrhL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03933
# 2: BPUM_3590___yrhL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2046
# Identity: 742/2046 (36.3%)
# Similarity: 742/2046 (36.3%)
# Gaps: 1077/2046 (52.6%)
# Score: 1706.0
#
#
#=======================================
BSNT_03933 0 -------------------------------------------------- 0
BPUM_3590___y 1 ATGAACAGCAAGGAGAATCGTTTACGTTATATATTAGGATTAGATGGGCT 50
BSNT_03933 0 -------------------------------------------------- 0
BPUM_3590___y 51 AAGAGCCATTGCTGTATTGGCGGTCATTGCTTATCACTTACATATTGGAC 100
BSNT_03933 0 -------------------------------------------------- 0
BPUM_3590___y 101 CTGCGAGCGGCGGGTTTCTTGGCGTTGATTTGTTTTTTGTGATCTCTGGT 150
BSNT_03933 0 -------------------------------------------------- 0
BPUM_3590___y 151 TACTTGATTACGACGATCTTGTTACATAAACAGGATTTGGGCTATCAAGA 200
BSNT_03933 0 -------------------------------------------------- 0
BPUM_3590___y 201 GCTTTTGCCATTTTGGATGGGCCGGATCAGAAGGCTCCTTCCAGCTGCTT 250
BSNT_03933 0 -------------------------------------------------- 0
BPUM_3590___y 251 ACGTGATGATTTTCTTAACCGTCAGCTGGTGTGCGATTGCGGGTTCGAAT 300
BSNT_03933 0 -------------------------------------------------- 0
BPUM_3590___y 301 GCACTTTTGTCCATTCGTGGCGATGCCTTATCGTCCTTTTTTTATGTCAG 350
BSNT_03933 0 -------------------------------------------------- 0
BPUM_3590___y 351 TAACTGGTGGTACATTTTCCATCAGCTGTCTTATTTTGATAGCTTCAATG 400
BSNT_03933 0 -------------------------------------------------- 0
BPUM_3590___y 401 CTGTATCTCCACTGAAAAATTTATGGTCTTTGGCGATTGAAGAGCAATTT 450
BSNT_03933 0 -------------------------------------------------- 0
BPUM_3590___y 451 TATATCATTTGGCCAGTACTATTGATTGCAGGGCTAAAATGGGTAAAAAA 500
BSNT_03933 0 -------------------------------------------------- 0
BPUM_3590___y 501 TAGATCTCATCTGCCATTGATTACCTTTGGCCTTGCACTTGTCTCCGCCT 550
BSNT_03933 0 -------------------------------------------------- 0
BPUM_3590___y 551 TATGGATGGCGATTCTTTATTCACCAGATATGGACCCAAGCAGGGTTTAT 600
BSNT_03933 0 -------------------------------------------------- 0
BPUM_3590___y 601 TATGGAACAGATACTCGTGCATTTGCGCTTCTGATTGGATGCAGCCTGGC 650
BSNT_03933 1 --TTG-------CACGC---GACTG---------AATTTTCGGCATTTT- 28
||| ||.|| ||||| ||.||.|..|.|.||
BPUM_3590___y 651 ATTTGTATGGCCCATGCAAAGACTGTCCAGCAAAAAGTTACTTCCTGTTG 700
BSNT_03933 29 ------GTATTTTA----------GTGTTG-------------------- 42
|||||||| ||.|||
BPUM_3590___y 701 GCAGGCGTATTTTACATATCGCTGGTTTTGGAACGTTTGCAGTTTTTCTT 750
BSNT_03933 43 ---TGTGTCTATTTCACA---GATGAAT---ACGAGCCTTTTCTTTA-CA 82
|||||.||| .|| ||.|||| ||| || |||||.|| ||
BPUM_3590___y 751 CTATGTGTTTAT---GCAGTGGACGAATTTGACG-GC--TTTCTCTATCA 794
BSNT_03933 83 GAGGCGGAATGCTATTCATT-AGCGTAACTGCCGCAATCCTTATTGCATG 131
||||||.||||| ||.||| .|..|.|.|||.||.||..|.|||||.||
BPUM_3590___y 795 -AGGCGGCATGCT-TTTATTCTGTCTGAATGCAGCCATTTTAATTGCGTG 842
BSNT_03933 132 TGTTTGCCATCCGAGC-AGCTTTTTAGGCAA-----TCTGCTTTCATGGA 175
..|.||||| ||..|| |||.|..||||.|| |||.||.|||
BPUM_3590___y 843 CATCTGCCA-CCCTGCAAGCCTACTAGGAAAATGGCTCTCCTATCA---- 887
BSNT_03933 176 GGCCGCT--TCGGTGGCTTGGAGCGAGGTCTTACGGAATTTATCTTTGGC 223
|||.|| || |||||||||..|.|.|||||.||.|||||.||.||||
BPUM_3590___y 888 -GCCACTCGTC--TGGCTTGGAAAGCGTTCTTATGGTATTTACCTGTGGC 934
BSNT_03933 224 ACTACCCTGTTATTGTGTTAAGCACGCCAGTTCA-AGAAATCGGAAACCC 272
|.||.||..|.||.|||.|.|.|||.||.| ||| .|||||.|||.|.||
BPUM_3590___y 935 ATTATCCCATCATCGTGCTGACCACCCCTG-TCATTGAAATTGGACAGCC 983
BSNT_03933 273 TGTTTTTTGG--CATATCG---TGCTAAAGGTCATTGTGACATGTATAC- 316
||.|.||| |.|.||| ||| ||.|||| ||.||| |.|||
BPUM_3590___y 984 --TTCTATGGGACGTGTCGCATTGC---AGATCAT--TGCCAT-TTTACT 1025
BSNT_03933 317 --TTGCCGAGCTTTCCTATCTTTTTATTGAGAAGCCGGTACGGACACAG- 363
||||.|||..|||.||.|..||.||.|||.|||||.|.|| |.|
BPUM_3590___y 1026 CATTGCAGAGGCTTCTTACCGCTTCATCGAGCAGCCGATTCG----CCGG 1071
BSNT_03933 364 ---GGATTTAGGCCAT-TTTTCCGCCGTG-----TTTTGATACATAGAAT 404
||.||.|..|.|| ||||.|..|.|| |||.||.|.|..||..
BPUM_3590___y 1072 CTTGGCTTCAAACAATATTTTGCCTCTTGGTCTATTTGGAAAAAGGGATA 1121
BSNT_03933 405 CAAGGAATGGAAAACGACATCTGTCATCAGCAAAATGTCAATTGGTTTCA 454
|||..|||||...||| |.|||| |||.|||...||||..|||
BPUM_3590___y 1122 CAAACAATGGTCTACG-----TCTCAT----AAAGTGTTCCTTGGAATCA 1162
BSNT_03933 455 ---------TTAT--TTTCGCTATACTTATT-----TTTGCAGGCGGGCT 488
|||| || ||||| ||.||| |
BPUM_3590___y 1163 CTGCGGCTCTTATCATT---------TTATTTACCATTGGCA-------T 1196
BSNT_03933 489 GT-CAGGGCTAGCCGGAGAGCAAAAGCATCCTACTAAATGGACCT-ATAG 536
|| || ||| ||| || |||.
BPUM_3590___y 1197 GTCCA--GCT----------------CAT--------------CTCATAC 1214
BSNT_03933 537 CTCACAAGAAACAAATGC--------TGACACCAGCCAGGCTTCTGGGGA 578
.||.| ||.|||| ||||||
BPUM_3590___y 1215 GTCTC------CACATGCCAAGGAAGTGACAC------------------ 1240
BSNT_03933 579 TAAA--AAGAACGCTGCAGCAGATAAAAAAC-----ACAATCCTGAACAA 621
||| |||| |.||| |.|| |||||.| ||..|.|.|||..|
BPUM_3590___y 1241 -AAATTAAGA---CGGCA-CCGA-AAAAAGCAGGCGACTCTACGGAATCA 1284
BSNT_03933 622 AAAACAACAGATTCCATTCAGGGTCAAAAGGAAAACAAAGATAGTGGGCA 671
|||||.| ||| |||||.||.|.||| ||
BPUM_3590___y 1285 AAAACGA-AGA--------------AAAAGAAAGAAAAA---------CA 1310
BSNT_03933 672 AGAGACTCATAAAAAGAAAGACACGCA-ATCTCAACAGACGAAAGAACCC 720
.||| |||||| ||| ||| ||| ||||
BPUM_3590___y 1311 CGAG---------AAGAAA-ACA-GCAGATC------------AGAA--- 1334
BSNT_03933 721 GCAGATACTGCGAAAGAGGTGTTAGCTATAGGAGATTCCGTCATGCTTGA 770
||||.|.|..|.|| |..|.|||||.||.||||||||||||||.||
BPUM_3590___y 1335 GCAGTTTCACCAAA-----TTCTTGCTATTGGTGATTCCGTCATGCTAGA 1379
BSNT_03933 771 TAT--------TTCTTCACACCTGCGTCAGTCACTTTCACATGTGACGAT 812
.|| .||||.|.| ||.||..|.||||..|.||.||
BPUM_3590___y 1380 CATAGCGCCAAATCTTGAAA--------AGACATATGCACAAATCACTAT 1421
BSNT_03933 813 TGATGGAAAGGTAGGAAGACAAAT----------GTCTCAAGCTTTGGAA 852
.||||.||||||.||.|||||||| ||| |||.|.|
BPUM_3590___y 1422 CGATGCAAAGGTTGGCAGACAAATGAACGAAGCCGTC---AGCATCG--- 1465
BSNT_03933 853 CTCGCAAGGGAGTACAAGTCTTTTAATCA-------GCCGAACAAGGCTG 895
||| || .||||....||.|||||||| ||| ||||
BPUM_3590___y 1466 CTC-CA---CAGTATGCTTCATTTAATCAATCTAATGCC-------GCTG 1504
BSNT_03933 896 TCATCATTGAGCTTGGAACCAATGGCTACTTTACAAACAGCCAAATCGAA 945
|.||.|||||||||||.||.||||||||.|||||..|..|| |
BPUM_3590___y 1505 TTATTATTGAGCTTGGCACGAATGGCTATTTTACTGAGGGC--------A 1546
BSNT_03933 946 CA---ACTGC-TTCAATC-----TTTCTCAAAAGCCCATATCTATCTTGT 986
|| ||.|| ||||.|| ||| |||||.||.|||||.|..|||||
BPUM_3590___y 1547 CATTGACAGCATTCATTCAGCAATTT-TCAAAGGCGCATATTTTCCTTGT 1595
BSNT_03933 987 CAATACACG-GGTTCCCCGCCAA-----TGGGAAAGCAAGGTAAATG-AA 1029
.| ||||| |..|| |||| |||||||...|.||.|||| |.
BPUM_3590___y 1596 GA--ACACGAGAGTC----CCAAGGTCTTGGGAAAATGATGTGAATGCAG 1639
BSNT_03933 1030 TCTTTGCAGCAACAGGCCCACGCACATCAAAATGTTACGTTAGTTGACTG 1079
||.|| ||||.|..||||.|...||||...|||||.||..|.||.||.||
BPUM_3590___y 1640 TCATT-CAGCGAGTGGCCGATCAACATGCCAATGTGACCCTGGTCGATTG 1688
BSNT_03933 1080 GCATACAGAAGCTCTTCAGCATCCGGA--------ATATTTTACCCCTGA 1121
||||.||| |.||..||||| .||||||...|||||
BPUM_3590___y 1689 GCATTCAG--------CCGCTACCGGACAGCCATCTTATTTTCAGCCTGA 1730
BSNT_03933 1122 TGGTGTTCACTTGGTTC--CTAAAGGGGCAAAAACTTTG--ACTGCTC-T 1166
||||||||||.| ||| |||||||..|..|.||.||| ||.|||| |
BPUM_3590___y 1731 TGGTGTTCACCT--TTCAACTAAAGGCTCTGACACATTGACACAGCTCAT 1778
BSNT_03933 1167 TATTG-----TTC--------AGGCGATG--------AAATCGTAA 1191
||..| .|| |||.|||| ..|||.|||
BPUM_3590___y 1779 TACAGCGAGCATCAAGAAAAAAGGAGATGTGTCATCTTCATCATAA 1824
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