Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02226 and BPUM_3573
See
Amino acid alignment /
Visit
BSNT_02226 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence dna-align/BSNT_02226___ykoE.1.24716.seq
# -bsequence dna-align/BPUM_3573___ykoE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02226___ykoE-BPUM_3573___ykoE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02226___ykoE-BPUM_3573___ykoE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02226___ykoE
# 2: BPUM_3573___ykoE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 719
# Identity: 365/719 (50.8%)
# Similarity: 365/719 (50.8%)
# Gaps: 238/719 (33.1%)
# Score: 702.0
#
#
#=======================================
BSNT_02226___ 1 ATGAAAAGCTGGAAAGTAAAAGAAATTGTC------ATCATGTCCGTTAT 44
||||.| |||||..|.||||||.||||| .|||| .||||
BPUM_3573___y 1 ATGACA---TGGAAGATGAAAGAAGTTGTCCTTGCTGTCAT----TTTAT 43
BSNT_02226___ 45 CAGTATCGTATTTGC---CGTTG---TTTATTTA--------------TT 74
|.| |||| ||.|| |.|||||| ||
BPUM_3573___y 44 CCG--------TTGCATGCGGTGTCATCTATTTAGGGTGGTCCACACTTT 85
BSNT_02226___ 75 ATTTACACATTTCGGAAACGTGCTTGCAGGTATGTTTGGGCCGATCGCCT 124
|.||.|.||||.|.|.| |||| ||||.|| |||
BPUM_3573___y 86 ACTTGCCCATTACAGCA-----CTTG---------TTGGCCC---CGC-- 116
BSNT_02226___ 125 ATGA------ACCGATTTACGGCATTTGGTTTATCGTTTCTGTGATCGCC 168
|.|| |.| ||.|..|||||||||.|.||.|.|..|...||||.|
BPUM_3573___y 117 AGGAGGGAACATC-ATGTTTGGCATTTGGGTGATTGCTAGTCCAATCGTC 165
BSNT_02226___ 169 GCGTACATGATTCGAAAACCGGGTGCGGCGCTCGTTTCTGAAATCATTGC 218
|||||.||.||.|.|||.|||||.||.||.||..|..|.|||| || ||
BPUM_3573___y 166 GCGTATATCATCCAAAAGCCGGGAGCTGCCCTGATCGCAGAAA-CA--GC 212
BSNT_02226___ 219 CGCTCTCGTTGAGTGCCTGCTG-GGAAATCCGT--CTGGC--CCGAT--G 261
||| |||| |||| ||||.|.| | |.||| ||..| |
BPUM_3573___y 213 CGC----------TGCC-GCTGTGGAATTAC-TAACAGGCAGCCACTTCG 250
BSNT_02226___ 262 GTCATCGTCA---TTGGC--ATTGTT------CAAGGGCTCGGGGCTGA- 299
|||.| ||| || || ||||.| |||||.||.|||||.||
BPUM_3573___y 251 GTCTT--TCAGCCTT-GCTGATTGGTGTATGCCAAGGACTTGGGGCAGAA 297
BSNT_02226___ 300 ---GGCTGTG---TTTCTTGCA---ACACGCTGGAAAGCATACTCTCTCC 340
|.||.|| ||| |||.| |.|| ||.|.|.||
BPUM_3573___y 298 ATCGCCTTTGCTCTTT-TTGGATATAAAC----GATATCGTA-------- 334
BSNT_02226___ 341 CTGT----CCTTATGCTGGCCGG----TATG-GGGTCTT----CAGTAGC 377
||| .||.||||||.|.|| |.|| ||.|.|| ||.|.||
BPUM_3573___y 335 -TGTGGACACTGATGCTGTCAGGTGCCTTTGCGGCTGTTGGAGCAATGGC 383
BSNT_02226___ 378 ---CAGCTTTATCTATGATCTCTTTGTTTCTGGCTATGCAGCCTATT--- 421
|||| |||.|||....|||||.| |..||||
BPUM_3573___y 384 TTACAGC------------CTCGTTGCAAATGGCTTT---GGTTATTACA 418
BSNT_02226___ 422 CAC--CAGGTTATCTGCTCATTATGCTTGTGATCCGTCTCATTTCCGGCG 469
||| ||.|| |||.|||||.|..||..|.|..|...|||||...||..
BPUM_3573___y 419 CACCTCAAGT--TCTACTCATCACACTCATAACTCAAATCATTAGTGGAA 466
BSNT_02226___ 470 CGCTTTTGGCGGG--GCTTCTCGGAAAAGCTGT--TAGCGACTCTCTCGC 515
.|.|..|||..|| |.||..|| ||||.||| |||..|| .
BPUM_3573___y 467 TGATACTGGGAGGATGTTTAGCG--AAAGTTGTGGTAGACAC-------A 507
BSNT_02226___ 516 TTAT-----ACAGGTGTGTTAAACGGA------ATGGCACTC-GGAAAGG 553
|||| ||.||||| ||.|| |||.|| || .|||||
BPUM_3573___y 508 TTATGTAAAACCGGTGT-----ACTGAATCAATATGCCA-TCATGAAAG- 550
BSNT_02226___ 554 AACTGAAAAAGAAACGGAAGCGGGCGTCAGAACATGCAAGCCTTTGA--- 600
.|||||||||| .||| || ||||| ||| |||
BPUM_3573___y 551 ----AAAAAAGAAAC-AAAG-----GT--GAACA-GCA------TGAATT 581
BSNT_02226___ 600 ------------------- 600
BPUM_3573___y 582 CATTTCTCGCGTGCAATAA 600
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.