Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02226 and BPUM_3573

See Amino acid alignment / Visit BSNT_02226 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence dna-align/BSNT_02226___ykoE.1.24716.seq
#    -bsequence dna-align/BPUM_3573___ykoE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02226___ykoE-BPUM_3573___ykoE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02226___ykoE-BPUM_3573___ykoE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02226___ykoE
# 2: BPUM_3573___ykoE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 719
# Identity:     365/719 (50.8%)
# Similarity:   365/719 (50.8%)
# Gaps:         238/719 (33.1%)
# Score: 702.0
# 
#
#=======================================

BSNT_02226___      1 ATGAAAAGCTGGAAAGTAAAAGAAATTGTC------ATCATGTCCGTTAT     44
                     ||||.|   |||||..|.||||||.|||||      .||||    .||||
BPUM_3573___y      1 ATGACA---TGGAAGATGAAAGAAGTTGTCCTTGCTGTCAT----TTTAT     43

BSNT_02226___     45 CAGTATCGTATTTGC---CGTTG---TTTATTTA--------------TT     74
                     |.|        ||||   ||.||   |.||||||              ||
BPUM_3573___y     44 CCG--------TTGCATGCGGTGTCATCTATTTAGGGTGGTCCACACTTT     85

BSNT_02226___     75 ATTTACACATTTCGGAAACGTGCTTGCAGGTATGTTTGGGCCGATCGCCT    124
                     |.||.|.||||.|.|.|     ||||         ||||.||   |||  
BPUM_3573___y     86 ACTTGCCCATTACAGCA-----CTTG---------TTGGCCC---CGC--    116

BSNT_02226___    125 ATGA------ACCGATTTACGGCATTTGGTTTATCGTTTCTGTGATCGCC    168
                     |.||      |.| ||.|..|||||||||.|.||.|.|..|...||||.|
BPUM_3573___y    117 AGGAGGGAACATC-ATGTTTGGCATTTGGGTGATTGCTAGTCCAATCGTC    165

BSNT_02226___    169 GCGTACATGATTCGAAAACCGGGTGCGGCGCTCGTTTCTGAAATCATTGC    218
                     |||||.||.||.|.|||.|||||.||.||.||..|..|.|||| ||  ||
BPUM_3573___y    166 GCGTATATCATCCAAAAGCCGGGAGCTGCCCTGATCGCAGAAA-CA--GC    212

BSNT_02226___    219 CGCTCTCGTTGAGTGCCTGCTG-GGAAATCCGT--CTGGC--CCGAT--G    261
                     |||          |||| |||| ||||.|.| |  |.|||  ||..|  |
BPUM_3573___y    213 CGC----------TGCC-GCTGTGGAATTAC-TAACAGGCAGCCACTTCG    250

BSNT_02226___    262 GTCATCGTCA---TTGGC--ATTGTT------CAAGGGCTCGGGGCTGA-    299
                     |||.|  |||   || ||  ||||.|      |||||.||.|||||.|| 
BPUM_3573___y    251 GTCTT--TCAGCCTT-GCTGATTGGTGTATGCCAAGGACTTGGGGCAGAA    297

BSNT_02226___    300 ---GGCTGTG---TTTCTTGCA---ACACGCTGGAAAGCATACTCTCTCC    340
                        |.||.||   ||| |||.|   |.||    ||.|.|.||        
BPUM_3573___y    298 ATCGCCTTTGCTCTTT-TTGGATATAAAC----GATATCGTA--------    334

BSNT_02226___    341 CTGT----CCTTATGCTGGCCGG----TATG-GGGTCTT----CAGTAGC    377
                      |||    .||.||||||.|.||    |.|| ||.|.||    ||.|.||
BPUM_3573___y    335 -TGTGGACACTGATGCTGTCAGGTGCCTTTGCGGCTGTTGGAGCAATGGC    383

BSNT_02226___    378 ---CAGCTTTATCTATGATCTCTTTGTTTCTGGCTATGCAGCCTATT---    421
                        ||||            |||.|||....|||||.|   |..||||   
BPUM_3573___y    384 TTACAGC------------CTCGTTGCAAATGGCTTT---GGTTATTACA    418

BSNT_02226___    422 CAC--CAGGTTATCTGCTCATTATGCTTGTGATCCGTCTCATTTCCGGCG    469
                     |||  ||.||  |||.|||||.|..||..|.|..|...|||||...||..
BPUM_3573___y    419 CACCTCAAGT--TCTACTCATCACACTCATAACTCAAATCATTAGTGGAA    466

BSNT_02226___    470 CGCTTTTGGCGGG--GCTTCTCGGAAAAGCTGT--TAGCGACTCTCTCGC    515
                     .|.|..|||..||  |.||..||  ||||.|||  |||..||       .
BPUM_3573___y    467 TGATACTGGGAGGATGTTTAGCG--AAAGTTGTGGTAGACAC-------A    507

BSNT_02226___    516 TTAT-----ACAGGTGTGTTAAACGGA------ATGGCACTC-GGAAAGG    553
                     ||||     ||.|||||     ||.||      |||.|| || .||||| 
BPUM_3573___y    508 TTATGTAAAACCGGTGT-----ACTGAATCAATATGCCA-TCATGAAAG-    550

BSNT_02226___    554 AACTGAAAAAGAAACGGAAGCGGGCGTCAGAACATGCAAGCCTTTGA---    600
                         .|||||||||| .|||     ||  ||||| |||      |||   
BPUM_3573___y    551 ----AAAAAAGAAAC-AAAG-----GT--GAACA-GCA------TGAATT    581

BSNT_02226___    600 -------------------    600
                                        
BPUM_3573___y    582 CATTTCTCGCGTGCAATAA    600


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