Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01361 and BPUM_3558
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:57
# Commandline: needle
# -asequence dna-align/BSNT_01361___yfiA.1.24716.seq
# -bsequence dna-align/BPUM_3558.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01361___yfiA-BPUM_3558.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01361___yfiA-BPUM_3558.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01361___yfiA
# 2: BPUM_3558
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1035
# Identity: 469/1035 (45.3%)
# Similarity: 469/1035 (45.3%)
# Gaps: 444/1035 (42.9%)
# Score: 758.0
#
#
#=======================================
BSNT_01361___ 1 ---------ATGCAGCTCGAAGAACTGATCAATCAGCACTACAG-CAAAT 40
|| || |.||||| ||..|.| |..|| ||.||
BPUM_3558 1 GTGGTGTTTAT-CA--TAGAAGA---GAATATT------TTTAGTCACAT 38
BSNT_01361___ 41 T-GAATGACAACGATTTTCATATTTT-------------AAAATATATAT 76
| | |||.||| |||||||.||| |||| |.||
BPUM_3558 39 TCG---GACGACG--TTTCATAGTTTGTCTCCGACCCAGAAAA---AGAT 80
BSNT_01361___ 77 TG--AAT--CAT------AAGCACACA--------TGCTATCA---CCTT 105
|| ||| ||| ||.|.|.|| |||| ||| |.||
BPUM_3558 81 TGCCAATTACATTTTAGAAAACCCTCAGAAGGTTGTGCT-TCATTCCATT 129
BSNT_01361___ 106 GGAATCGACGCGCTTGCCAAAGCTTGC------AGTGTATCG-CGTTC-C 147
|.|..||.|||||...|| ||| ||||.|.|| ||.|| .
BPUM_3558 130 --AGTGCACTCGCTTCTGAA----TGCAATACAAGTGAAACGACGATCTT 173
BSNT_01361___ 148 TCAATTT-TACGGCTTGCCCAAAAGCTCGGTT-----TCAGCGGTTAC-- 189
||..||| ||||| |||| |.|||| ||| |||
BPUM_3558 174 TCGGTTTCTACGG-------AAAA--TTGGTTATGAATCA-----TACCA 209
BSNT_01361___ 190 AGTGAATTTCGCGTCTTTTT---AAAGTGGGA-AGATCAGCCGGAAGA-- 233
|||| |||||.|||..|.| |.| ||| |.|.||.|| ||.|
BPUM_3558 210 AGTG--TTTCGTGTCCATGTCGCACA---GGATATAGCAACC--AATACA 252
BSNT_01361___ 234 -------------------------AGG----CGAGAGTAT--------- 245
||| |||.|||.|
BPUM_3558 253 CCCCAATCCATATACGGTGAAATCGAGGCATCCGATAGTGTAGCTGACAT 302
BSNT_01361___ 246 ----------------GAGTTTTCAA-AAGCTGC--TTGATGATATTGAA 276
|||||..||| ||.|| | ||.|.|||| ||||
BPUM_3558 303 TAAACATAAGGTCATAGAGTTAACAACAAACT-CTATTCAAGATA-TGAA 350
BSNT_01361___ 277 GCAAAT--TTGAAGTTCTTACGGACAAAGGACATGACGGACATGTGCCAG 324
.||.|| |.||| ||| |||| |.|.||.| ||.
BPUM_3558 351 ACATATAGTAGAA---------GAC------CATG-CCGTCACG---CAA 381
BSNT_01361___ 325 CTGATTG-----ATGAAGCGGACCGCATTT----TCGTCTACGGTTCTGG 365
.|.|||| |||||.|.| |||..| .||||| .||.|||
BPUM_3558 382 TTTATTGAACAAATGAAACAG---GCACATAAAACCGTCT---TTTTTGG 425
BSNT_01361___ 366 AAATGCGCAAAAGATATGCGCC--CGCGACCTGCAAAGAATGTTTATT-C 412
| ||| .|||.||.|| |||||| |
BPUM_3558 426 A------------------GCCGGTGCGTCCAGC--------TTTATTGC 449
BSNT_01361___ 413 CGCGCCATCGC-TATCTTA----------------TTTTGATTGAAG--- 442
|| |..|| || ||||.|| |||||||..|||
BPUM_3558 450 CG-GGGAT-GCTTATCATAAGTTCCTCCAGCTTGGTTTTGATGTAAGTCT 497
BSNT_01361___ 443 ATACAAATGAATTTAATTTGATGCGCGATGATTTTAA----------AGT 482
||.| |.|||.....||.|||||..| ||||||..|| .|.
BPUM_3558 498 ATGC-AGTGATCCGCATATGATGAAC-ATGATTGCAACTCACGCCACGGA 545
BSNT_01361___ 483 AAACGATCTGTTTATCAT---CATTTCTCTTTCCGGAGAAACACCGGAG- 528
|.||||| ||||||.| .||.||.|.|||.|||||.| |.||
BPUM_3558 546 ACACGAT---TTTATCGTTGCGATCTCCCATTCAGGAGAGA----GTAGA 588
BSNT_01361___ 529 ------CT-GATTCCTCAG-GCAAGAATGCTTT-CT---GCAAAGGG--- 563
|| |||.|| | |||| ||| || |.||||||
BPUM_3558 589 GAAATTCTCGATGCC---GTGCAA------TTTGCTAAAGAAAAGGGAGC 629
BSNT_01361___ 564 ---TATTCCCTTTATTTCCATTA------CGAATTTAAAAAAC------- 597
.|||.|||.||| ||.|| ||||.|.|.||..|
BPUM_3558 630 AAAAATTGCCTCTAT---CACTAGCTATCCGAAATCAGAACTCGCAAAGC 676
BSNT_01361___ 598 ------AATGTCCTC-GCCCAG--------------------------CT 614
|.|.||.|| ||.||| ||
BPUM_3558 677 GATCTGACTTTCATCTGCTCAGTTCTTCTAGGGAGACAACCTATCGATCT 726
BSNT_01361___ 615 GACTCCGCATAATCT------TTATGCGACAAGCAAACCTGTGA-CATTA 657
||||| |||.|||| ||| ||.|| |.||||| |||
BPUM_3558 727 GACTC--CATGATCTCCCGTATTA----ACCAG----CTTGTGATCAT-- 764
BSNT_01361___ 658 AGCGAT----AAAACGGAAATTGTCGCTTTTGCACCGTTTTTTCTCGTTG 703
|||| .|.||| |||.|||| |||||
BPUM_3558 765 --CGATGTACTATACG----TTGCCGCT--------GTTTT--------- 791
BSNT_01361___ 704 GCGA---AGCATTGTTCCGCGCATATG---TTGA-----TTACAAAGA-- 740
.|| ||.|| ||.||| |||| |.| |||||
BPUM_3558 792 -AGAACTAGGAT---------CAAATGCCATTGAAAATGTGA-AAAGATC 830
BSNT_01361___ 741 ---------GGCAGAAAAAAATGACA-ATGAGTAG 765
.|.||..||||||.|.| ||||
BPUM_3558 831 TCGATTAGCCGTAGCTAAAAATAAAACATGA---- 861
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