Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05975 and BPUM_3557
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:31
# Commandline: needle
# -asequence dna-align/BSNT_05975.1.24716.seq
# -bsequence dna-align/BPUM_3557.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05975-BPUM_3557.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05975-BPUM_3557.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05975
# 2: BPUM_3557
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 790
# Identity: 434/790 (54.9%)
# Similarity: 434/790 (54.9%)
# Gaps: 215/790 (27.2%)
# Score: 936.0
#
#
#=======================================
BSNT_05975 1 ---------------ATGA-AATGGAATAAAATG-CTGAAAGCTGCGGGG 33
|||| |||| |.||||.| ||.|.|
BPUM_3557 1 ATGGGGGTTTTTACTATGACAATG--AAAAAAGGCCTAACA--------- 39
BSNT_05975 34 ATTGCAGTCT--------------TGTTTTTTTCCGTATTAGC------- 62
|| |||||| ||.||.||||..|.||.||
BPUM_3557 40 AT--CAGTCTGCTCATTTTTTCACTGATTGTTTCGTTGTTTGCGCCAGTT 87
BSNT_05975 63 --ATATGCG---GCCCCATCTTTAAAAGCAGTTCAAGCGAAAACACCGAC 107
||.|||| ||| ||| |||||.||||.|.|||.
BPUM_3557 88 GGATCTGCGGATGCC---------AAA------CAAGCAAAAAAAGCGAA 122
BSNT_05975 108 TGTCAGCACCCATACGTACAAAAAGATCAAGGAGTTAACGTATCCACAAG 157
.||.|||||.|||...||.|||||||..||...|||.|..|||.||||.|
BPUM_3557 123 AGTAAGCACACATTATTATAAAAAGAAAAAAACGTTTAAATATGCACAGG 172
BSNT_05975 158 TGCATCACATCGGGAATGCCGCGTTTGAAAAGAAAATCAATCAAGAGCTG 207
||.|..||.|..|.|| |.|||.|.||||| |..|||||||..||..|.
BPUM_3557 173 TGAAAAACCTAAGTAA-GGCGCATATGAAA--ACCATCAATCGTGATTTA 219
BSNT_05975 208 AAAGCCTACATTGAACAATCGTA------TCAGGAATATCTGAAA-AACA 250
||||...||||.|.|...||.|| |.|...||| ||.||| .||.
BPUM_3557 220 AAAGAAGACATCGCATTCTCTTATTCTACTTATTTATA-CTTAAAGGACG 268
BSNT_05975 251 AAAAAGCAGGCG-AACAGCAGGGCTTTAAAACGGAATATC-------GAA 292
|| ||| ||.||.|.|||||| .||||.||| .||
BPUM_3557 269 AA-------GCGAAAAAGGATGGCTTT----GGGAAGATCACGTACGAAA 307
BSNT_05975 293 CATCCTT--CAGCGTCAAAT---ACAATGCGGCAGGCAAGCTCAGCAT-T 336
.|||.|| .|.|| |||| |||||| ||.|| ||.|||||.|| |
BPUM_3557 308 GATCGTTTAAAACG--AAATTTAACAATG-GGAAG--AAACTCAGTATCT 352
BSNT_05975 337 CAAAC-------AC-TCAATTAT-----ATCTATTCAGGCGGCG--CCCA 371
.|||| || |.|||.|| | ||.|| ||||| .|.|
BPUM_3557 353 TAAACTATGATTACATGAATGATGGTGGA---ATGCA--CGGCGATACGA 397
BSNT_05975 372 CGGTTTAACGTCTGTCCAGTCCTTCAACTATGACTTG-----------AA 410
.|||| ||||| |.|.||||||| || ||
BPUM_3557 398 TGGTT---------TCCAG--CATGAACTATG---TGCTAACGAAGAAAA 433
BSNT_05975 411 AGCACAAAAGCGGGTGACGCTGGAGCAGA--TTCTGAGCACCAAAACAAA 458
|| || |||||..|| |..||.|| |||| ||.|||..|| |||.|||
BPUM_3557 434 AG-AC-AAAGCAAGT-ATTCTTGA-CAGACGTTGTGAAAAC--AAAGAAA 477
BSNT_05975 459 AGTCAGC-----AAAACGAGAGATTACCTATATAGCTATATCAAA-AAAC 502
| ||| |||...||||||||..|.||||.|||.| |||| ||||
BPUM_3557 478 A---AGCGTACGAAAGTAAGAGATTATATTTATAACTACA-CAAAGAAAC 523
BSNT_05975 503 ACGATGAGCTGTTTTT------CCCTGATGTAAAGAAAGAG-----GATA 541
| .|.||||...||.| .|||| |||.|||||| ||.|
BPUM_3557 524 A-TAAGAGCAAATTCTATGCGAACCTG----AAAAAAAGAGACATTGAAA 568
BSNT_05975 542 T-AACCCTA-AACAAAGACACAATGTTTTACTTTACGGCAAACGGAATCG 589
| || ||| ||| ||.|| ||.||||||||||..|||.|||||.|
BPUM_3557 569 TCAA--CTACAAC----ACGCA--GTATTACTTTACGAAAAAGGGAATTG 610
BSNT_05975 590 CTATCGTCTTTGGCCAG---TATGACTTGGGGCCT---TATGCAGCGGGA 633
||.|.||||| |||| |||||..|....||| ||||.| ||||
BPUM_3557 611 CTGTTGTCTT---CCAGCCATATGAGATTTCACCTTACTATGTA--GGGA 655
BSNT_05975 634 ATCCGGGATG-TGCAGGTGCCAGCCTCTATTTATCAATAA 672
..|||| || |.||.||.||.||.....|.|||.|||||
BPUM_3557 656 TACCGG--TGATTCAAGTTCCTGCGAAAGTATATAAATAA 693
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