Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01359 and BPUM_3554

See Amino acid alignment / Visit BSNT_01359 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:57
# Commandline: needle
#    -asequence dna-align/BSNT_01359___yfjA.1.24716.seq
#    -bsequence dna-align/BPUM_3554___yfjA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01359___yfjA-BPUM_3554___yfjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01359___yfjA-BPUM_3554___yfjA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01359___yfjA
# 2: BPUM_3554___yfjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 360
# Identity:     231/360 (64.2%)
# Similarity:   231/360 (64.2%)
# Gaps:          72/360 (20.0%)
# Score: 667.5
# 
#
#=======================================

BSNT_01359___      1 ---------TTGGACTCATATAAAGTCATTGA--GCTGGCA-------AA     32
                              |||||.||     .|||||   |  |||||||       ||
BPUM_3554___y      1 GTGCGAAAGTTGGATTC-----TAGTCA---AACGCTGGCACTCGCTCAA     42

BSNT_01359___     33 CAAGTAT-AGTGCGGCCGCAGAAGAG--------GTCAGAAGCTCCAAAA     73
                      ||||.| || |..||.||.||.|||        |||| ||||    |..
BPUM_3554___y     43 -AAGTTTCAG-GAAGCAGCTGAGGAGATTCGGCAGTCA-AAGC----AGT     85

BSNT_01359___     74 TGCTGCTTGAATCCCGGTTATCT----GCATTGGGA-GATGCTTGGCAGG    118
                     ||||| ..||||  |||    ||    |||.|.||| .|.|| |||||.|
BPUM_3554___y     86 TGCTG-GAGAAT--CGG----CTCAAGGCAGTAGGATCAGGC-TGGCAAG    127

BSNT_01359___    119 GCAAAGCAAGAGATTCGTTTGA-CCAGGATTTCGAGGAAACGAAAGC-CG    166
                     |..|||||||..||...||||| |.|.|.||| ||.|||||.|.||| ||
BPUM_3554___y    128 GAGAAGCAAGGAATAAATTTGATCAAAGCTTT-GAAGAAACAACAGCACG    176

BSNT_01359___    167 CCTACGATCAATTCGAACAGGAGCTGCTTGAAACAAGCCAAGAGCTGAAG    216
                      |||.||||||||.|||.||||..|||||||||||||.||.||.|||...
BPUM_3554___y    177 -CTATGATCAATTTGAAAAGGACTTGCTTGAAACAAGTCAGGAACTGCGC    225

BSNT_01359___    217 GCTGCCGCTGTCAAAATAGAAGAACGAAAAGCTGAAATTGCCAGAATGGA    266
                     |.|||.||.||||||||.||.|||||.|||||||||||.|||||||||||
BPUM_3554___y    226 GATGCAGCGGTCAAAATCGAGGAACGGAAAGCTGAAATAGCCAGAATGGA    275

BSNT_01359___    267 AGAACTGGAGCGTAAAG------CAAGAGAGGAAAGACATAAACTC----    306
                     |||.||.||||| ||||      .||||..|||.|||.|.|||| |    
BPUM_3554___y    276 AGAGCTTGAGCG-AAAGAGACGAGAAGAACGGAGAGAAAGAAAC-CGAGA    323

BSNT_01359___    307 -GGGAGGTGA    315
                      |||||.|||
BPUM_3554___y    324 AGGGAGATGA    333


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.