Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01359 and BPUM_3554
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:57
# Commandline: needle
# -asequence dna-align/BSNT_01359___yfjA.1.24716.seq
# -bsequence dna-align/BPUM_3554___yfjA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01359___yfjA-BPUM_3554___yfjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01359___yfjA-BPUM_3554___yfjA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01359___yfjA
# 2: BPUM_3554___yfjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 360
# Identity: 231/360 (64.2%)
# Similarity: 231/360 (64.2%)
# Gaps: 72/360 (20.0%)
# Score: 667.5
#
#
#=======================================
BSNT_01359___ 1 ---------TTGGACTCATATAAAGTCATTGA--GCTGGCA-------AA 32
|||||.|| .||||| | ||||||| ||
BPUM_3554___y 1 GTGCGAAAGTTGGATTC-----TAGTCA---AACGCTGGCACTCGCTCAA 42
BSNT_01359___ 33 CAAGTAT-AGTGCGGCCGCAGAAGAG--------GTCAGAAGCTCCAAAA 73
||||.| || |..||.||.||.||| |||| |||| |..
BPUM_3554___y 43 -AAGTTTCAG-GAAGCAGCTGAGGAGATTCGGCAGTCA-AAGC----AGT 85
BSNT_01359___ 74 TGCTGCTTGAATCCCGGTTATCT----GCATTGGGA-GATGCTTGGCAGG 118
||||| ..|||| ||| || |||.|.||| .|.|| |||||.|
BPUM_3554___y 86 TGCTG-GAGAAT--CGG----CTCAAGGCAGTAGGATCAGGC-TGGCAAG 127
BSNT_01359___ 119 GCAAAGCAAGAGATTCGTTTGA-CCAGGATTTCGAGGAAACGAAAGC-CG 166
|..|||||||..||...||||| |.|.|.||| ||.|||||.|.||| ||
BPUM_3554___y 128 GAGAAGCAAGGAATAAATTTGATCAAAGCTTT-GAAGAAACAACAGCACG 176
BSNT_01359___ 167 CCTACGATCAATTCGAACAGGAGCTGCTTGAAACAAGCCAAGAGCTGAAG 216
|||.||||||||.|||.||||..|||||||||||||.||.||.|||...
BPUM_3554___y 177 -CTATGATCAATTTGAAAAGGACTTGCTTGAAACAAGTCAGGAACTGCGC 225
BSNT_01359___ 217 GCTGCCGCTGTCAAAATAGAAGAACGAAAAGCTGAAATTGCCAGAATGGA 266
|.|||.||.||||||||.||.|||||.|||||||||||.|||||||||||
BPUM_3554___y 226 GATGCAGCGGTCAAAATCGAGGAACGGAAAGCTGAAATAGCCAGAATGGA 275
BSNT_01359___ 267 AGAACTGGAGCGTAAAG------CAAGAGAGGAAAGACATAAACTC---- 306
|||.||.||||| |||| .||||..|||.|||.|.|||| |
BPUM_3554___y 276 AGAGCTTGAGCG-AAAGAGACGAGAAGAACGGAGAGAAAGAAAC-CGAGA 323
BSNT_01359___ 307 -GGGAGGTGA 315
|||||.|||
BPUM_3554___y 324 AGGGAGATGA 333
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