Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01358 and BPUM_3553
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:57
# Commandline: needle
# -asequence dna-align/BSNT_01358___yfjB.1.24716.seq
# -bsequence dna-align/BPUM_3553___yfjB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01358___yfjB-BPUM_3553___yfjB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01358___yfjB-BPUM_3553___yfjB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01358___yfjB
# 2: BPUM_3553___yfjB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1315
# Identity: 821/1315 (62.4%)
# Similarity: 821/1315 (62.4%)
# Gaps: 209/1315 (15.9%)
# Score: 2357.0
#
#
#=======================================
BSNT_01358___ 1 GTGTCAGGAAACATTGCAGTTGATCCGGATAAGCTCGAACA--GCTTGCA 48
.||.||.|..||||.|..||||||||.|||.|||| .||| |||.||.
BPUM_3553___y 1 ATGGCACGTGACATAGTGGTTGATCCAGATCAGCT--GACAGGGCTGGCG 48
BSNT_01358___ 49 AATGATGTAGTCACTGAATTAACTGATATGGAAAACAAATATAAGGACC- 97
||||||||.||....|||.|..|||..||.|||| ..|||.|||
BPUM_3553___y 49 AATGATGTTGTAGGCGAACTGTCTGCCATAGAAA------CGAAGCACCG 92
BSNT_01358___ 98 -----TGCAT-GTGGAGCTGGGGCAGATG-----ATTTT--GCAATGCGA 134
|.||| || ||.||| |||| ||||| || ||.||
BPUM_3553___y 93 CGATTTACATAGT-GAACTG-----GATGGTCTCATTTTAGGC--TGTGA 134
BSNT_01358___ 135 TCCCCGCTACAGCAGCTGTTTTTCTGGAGTGGGCGATGCGTGGAGCTCAG 184
|||.||.||.||.|||||||||||.||.||.||.|||||.|||.|..|||
BPUM_3553___y 135 TCCTCGGTATAGAAGCTGTTTTTCCGGCGTCGGGGATGCATGGGGAGCAG 184
BSNT_01358___ 185 GAAAGGCGCTCGTCACCAAGCTGAGTGACA---ATGAGATT----TTCAT 227
||.|.||..|..|||..||..|||| || ||||.||| |||.|
BPUM_3553___y 185 GACAAGCATTGATCAGTAAATTGAG---CAGTGATGATATTGCGATTCGT 231
BSNT_01358___ 228 CA-GAAAAACAGGCGATAAATTTGTGGAACAAGATGATATTTTGCGAAAG 276
|| |.|||| ||||||.|.||.|||..||||||||||||.||.||.
BPUM_3553___y 232 CATGCAAAA-----GATAAAATGGTCGAAGCAGATGATATTTTACGGAAA 276
BSNT_01358___ 277 CTCTACAATGCCTACGACAAATACGGTACGATGACAAGCTTAACCGCTCT 326
.|.||||.|..|||.||..||||.||.||..|.||.||||||.|.|.|.|
BPUM_3553___y 277 TTGTACAGTATCTATGATCAATATGGAACACTCACGAGCTTAGCTGGTAT 326
BSNT_01358___ 327 TATGCTGACGCAGGGAAAATATTACGGATTAGGGCTTACGAAATTTGTGA 376
|.||.|||.|||||..|||||.|||||..|.|||.|.||||..||..|.|
BPUM_3553___y 327 TGTGATGATGCAGGCGAAATACTACGGGCTTGGGATGACGACCTTCATTA 376
BSNT_01358___ 377 AACAACCAAGCGGC--TTGCATACAGCCCAGCACTCAAAACTGCT-CTTG 423
||.| ||..||| || ||.||||.|||||.|||||.||.|| ||||
BPUM_3553___y 377 AAGA---AAATGGCCGTT--ATGCAGCGCAGCATTCAAAGCTACTGCTTG 421
BSNT_01358___ 424 GATATTTCCAGGGCCG-----------------TTGACAG-CTCACGTTA 455
||||...|.|||| |||||.| ||
BPUM_3553___y 422 ---ATTTGACGAGCCGGGTAGAAGGAACGAGATTTGACCGACT------- 461
BSNT_01358___ 456 TCAAAAAGCAGCAAGAGTGCTTTTG--AATC-CTAAATATTTGTTGAAAA 502
|||||| |.|||.| ||.| .||||.|.||.|| ||||
BPUM_3553___y 462 ---------AGCAAG---GATTTGGCTAAGCAATAAAGAATTATT-AAAA 498
BSNT_01358___ 503 AGA-CAAA-CCGTCCATTTTCAGATTTGGTACATAAAAAGTTTACAAAAT 550
.|| |||| ..|||.| |..|.||||||||.|||||.||.||.|||||||
BPUM_3553___y 499 CGATCAAATTGGTCGA-TGGCTGATTTGGTCCATAAGAAATTCACAAAAT 547
BSNT_01358___ 551 ACTTCCCTCAGGACACGGTGGATTTTTCAAACAGCGTCAGAAGCTACACA 600
..|..|||.|.||.||.||.|..|||.|.||.||.|||.|....|..|||
BPUM_3553___y 548 TTTATCCTGACGATACAGTTGCATTTACGAATAGTGTCCGTGATTTTACA 597
BSNT_01358___ 601 AAAGGATTTCTTAAT--GAAG---CCGGCGTACGCTCCACTTTGAAGGAT 645
||||||..|.|.||| |||| .|||| |.||.|| |||..|
BPUM_3553___y 598 AAAGGAAGTATCAATTGGAAGGACACGGC-TGCGATC-------AAGTCT 639
BSNT_01358___ 646 G-TGGGAAAAACGGGCTTGAGATTCGCGAAAGGAAATGCCATTACCGCCA 694
| |..|||||| .||.|..|||||.||.||||||||||||||.|...|.|
BPUM_3553___y 640 GTTTTGAAAAA-TGGATCAAGATTTGCCAAAGGAAATGCCATCATTTCAA 688
BSNT_01358___ 695 CACTGATTACCGGTGCGACCGAAACATTCGGAGCAGGCGTGAAAATTGCT 744
|..|..|.||.|||||.||.|||||..||||....||..||||||||||.
BPUM_3553___y 689 CGGTAGTCACTGGTGCAACGGAAACGGTCGGCTGTGGTTTGAAAATTGCA 738
BSNT_01358___ 745 GAAAATTATGCAAAATACCAGGACAAACCCGAAGTTCTCAAGCGTGAAAA 794
||.||.||||||.|||.|...||..|.||.|||||.||.|||||||||||
BPUM_3553___y 739 GAGAACTATGCAGAATTCGGTGATCAGCCAGAAGTCCTGAAGCGTGAAAA 788
BSNT_01358___ 795 CGCCAAGGCCGTCGGGAATGCTGTGAATAACACCATTTTTATTGCCGGCG 844
.||.|||||.||.||.|||||.|||||.||.||..|.|||||.||.||||
BPUM_3553___y 789 TGCGAAGGCTGTTGGAAATGCAGTGAACAATACGGTCTTTATCGCTGGCG 838
BSNT_01358___ 845 G---TGCCACAGCTGGTGCTGTCATCGGCGGTGCAATTGGAAGCTTTGCA 891
| ||.| ||.|||||.||..||||.||.||..||||||||||.|||
BPUM_3553___y 839 GGTCTGTC---GCAGGTGCCGTTGTCGGAGGAGCTCTTGGAAGCTTCGCA 885
BSNT_01358___ 892 GGACCTGTGGGTACTGTCCTTCTTGGGGCAGCAGGTTCATACATTGG--- 938
|||||..|.||.|||||| .||||.|.||| ||||||
BPUM_3553___y 886 GGACCGATTGGAACTGTC---GTTGGAGGAGC---------CATTGGTTC 923
BSNT_01358___ 939 CGGAGTCG---------TCGGAGAACAAATCGCCAAATATACAGCCGGTT 979
||.||||| |.||||||.||.|.|||||....|||.|.||.|
BPUM_3553___y 924 CGCAGTCGGTGGTTTTATAGGAGAAAAAGTTGCCAAGCTGACATCAGGAT 973
BSNT_01358___ 980 TTGCCGAAAAAGCAGCCTTAAAGCTGAAA------GAACCGATCCATGCT 1023
||||.| ||||| .||..|| ||||| ||.||.||.|||||.
BPUM_3553___y 974 TTGCTG----AGCAG-GTTGCAG-TGAAATTAAAGGACCCAATTCATGCA 1017
BSNT_01358___ 1024 GTCGTTGATACAGCCAAAAAAGGGCTGGAATCA---------GCCGG-CA 1063
|||||.||| ||||||..|.||.|| ||.|| ||
BPUM_3553___y 1018 GTCGTGGAT---------AAAGGGAGGCAAGCATTCGAGCTTGCGGGTCA 1058
BSNT_01358___ 1064 AAGTCGTCAAATCAGTGAATGACGGCATAGATGCGGCGAATAAATC---- 1109
|.|| ||.|||.||||.||||||..|||.|||..||| |||||
BPUM_3553___y 1059 AGGT-GTGAAAGCAGTCAATGACACCATTGATCAGGC----AAATCAGGT 1103
BSNT_01358___ 1110 GATACATAAAGGGATAGACAGCGCGAAAAAAGGAATGGAAAAAGCAAAGA 1159
|||||||||||||||| ||||||.||||..
BPUM_3553___y 1104 GATACATAAAGGGATA---------------------GAAAAAACAAAAG 1132
BSNT_01358___ 1160 AAACAGCGGATTCGCTCATACACGGCGCAACCCATTTCCTTAAAGGGAAA 1209
||||.||.||||||||||||.|.||.|||..|.|||||.||||.||...|
BPUM_3553___y 1133 AAACCGCAGATTCGCTCATAAAAGGTGCAGGCGATTTCTTTAAGGGTGCA 1182
BSNT_01358___ 1210 TTTTCATTTGGATAG 1224
|||||.||||||||.
BPUM_3553___y 1183 TTTTCTTTTGGATAA 1197
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